Browse Element(s) Details


Os.51996.1.S1_at

Description gb:AK064497.1
DB_XREF= gi:32974515
TID=Os.51996.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-D01, full insert sequence.
FL= gb:AK064497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6665010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51996.1.S1_at--113--6711NONE
GTTCCTGTACGGTGTTTGCTGCTGC
NONE
Os.51996.1.S1_at--954--6571Chr01:39039107..39039131 (25 bp)
GATTCCCCTGAACTGATGTTGGCGT
LOC_Os01g66650
Os.51996.1.S1_at--632--6931Chr01:39039074..39039098 (25 bp)
GTAGTGATTTTCCTTTTGTGATGCA
LOC_Os01g66650
Os.51996.1.S1_at--200--5491Chr01:39039007..39039031 (25 bp)
GAACTTGAACTGATGTAGGTCTGTA
LOC_Os01g66650
Os.51996.1.S1_at--83--10451Chr01:39038975..39038999 (25 bp)
TTAGTTATCCGTTTATCCTTGCCAG
LOC_Os01g66650
Os.51996.1.S1_at--367--1531Chr01:39038952..39038976 (25 bp)
AGCAGTTATCCTTCCTAGTAATCCT
LOC_Os01g66650
Os.51996.1.S1_at--842--2591Chr01:39038933..39038957 (25 bp)
AATCCTTCCGATGTCCGTTGTTTAT
LOC_Os01g66650
Os.51996.1.S1_at--537--8771Chr01:39038915..39038939 (25 bp)
TGTTTATCTTTCTTGGTCAACCCAC
LOC_Os01g66650
Os.51996.1.S1_at--95--9711Chr01:39038899..39038923 (25 bp)
TCAACCCACTTATCCTTCATGGTTA
LOC_Os01g66650
Os.51996.1.S1_at--775--7871Chr01:39038879..39038903 (25 bp)
GGTTATCCTTGTAACTTCCACACAT
LOC_Os01g66650
Os.51996.1.S1_at--46--3311Chr01:39038861..39038885 (25 bp)
CACACATTTATCCTTCTTGGTTGAT
LOC_Os01g66650
Target Sequence 
GTTCCTGTACGGTGTTTGCTGCTGCATGGAAGTACTATCTGGTGGACTCGGGGTACCCAAACCGGATTGGTTACCTGGCG
CCCTACAAGGGGACCAAGTACCATCTTCAAGAGTTTCAAAACGCCGCAGAACCAGAATGTAAACAAGAGGCAAGCAGATT
GGTGGAGACACCTTGGCGCGATTTGGCGGACACACCTCCAGGGGAGCAGTGATGTCTTCCTGCCGGTGCATCTTCCTGAT
GATGGTCTATGTTGTGATCTTTGTGATTGCCTGGTGGTGTATCACGTCTAGCCGTCTAGGATTCCCCTGAACTGATGTTG
GCGTAGTTGGTAGTAGTGATTTTCCTTTTGTGATGCATGTTGGTTCGATGAACTTTGTCTGTAATGTTGGTCAAGTGCTG
AACTTGAACTGATGTAGGTCTGTAGTAAACTTTAGTTATCCGTTTATCCTTGCCAGCAGTTATCCTTCCTAGTAATCCTT
CCGATGTCCGTTGTTTATCTTTCTTGGTCAACCCACTTATCCTTCATGGTTATCCTTGTAACTTCCACACATTTATCCTT
CTTGGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis