Browse Element(s) Details


Os.23604.1.S1_at

Description gb:AK070087.1
DB_XREF= gi:32980111
TID=Os.23604.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1099D03.26 (B1099D03.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042J18, full insert sequence.
FL= gb:AK104708.1 gb:AK070087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6660011/11rhodanese-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23604.1.S1_at--470--4331Chr01:39012467..39012491 (25 bp)
CCATCTGTTCATGTTGTTCCAAGGA
LOC_Os01g66600
Os.23604.1.S1_at--1136--1991Chr01:39012421..39012445 (25 bp)
ACTCTGATGTTAGCGCTGATGGAAC
LOC_Os01g66600
Os.23604.1.S1_at--718--10451Chr01:39012365..39012389 (25 bp)
TTAGCTACCCCTAATAGTTCTGTAG
LOC_Os01g66600
Os.23604.1.S1_at--187--5331Chr01:39012320..39012344 (25 bp)
GAAGATAGTACCGAGAAGCCCAATG
LOC_Os01g66600
Os.23604.1.S1_at--790--2651Chr01:39012305..39012329 (25 bp)
AAGCCCAATGGGAGTACTTCAGCCA
LOC_Os01g66600
Os.23604.1.S1_at--1059--10511Chr01:39012288..39012312 (25 bp)
TTCAGCCATAAAGCGTGCAAGCCGG
LOC_Os01g66600
Os.23604.1.S1_at--543--2651Chr01:39012270..39012294 (25 bp)
AAGCCGGAGACCATTATCACCATAT
LOC_Os01g66600
Os.23604.1.S1_at--574--2231Chr01:39011693..39011713 (21 bp)
AAATTACCCTGACTTGAAGCCACCA
LOC_Os01g66600
Os.23604.1.S1_at--994--5491Chr01:39011565..39011589 (25 bp)
GAACAGTCAGTCATTTCCGGCATAA
LOC_Os01g66600
Os.23604.1.S1_at--221--5371Chr01:39011482..39011506 (25 bp)
GAAGACCATTGCTGTTACTGACATC
LOC_Os01g66600
Os.23604.1.S1_at--1077--31Chr01:39011397..39011421 (25 bp)
ATTGTTTGTAGGTTGCAGCGCGTTA
LOC_Os01g66600
Target Sequence 
CCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCA
GCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCG
AGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTG
AAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGNAGAACAATNAAGGGAAATAAGAAATCAGACAAAGAGA
AGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCG
TGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGT
TGGATGNTGTATTNTNCCCCCCATGTCTTTTGTCATGTTCATTGTTTGTAGGTTGCAGCGCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis