Browse Element(s) Details


OsAffx.9609.1.S1_at

Description gb:NM_190219.1
DB_XREF= gi:34907521
GEN=B1099D03.32
TID=OsAffx.9609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1099D03.32 (B1099D03.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6665011/11expressed protein
LOC_Os03g490001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g307601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g149401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9609.1.S1_at--178--8811Chr01:39040589..39040613 (25 bp)
TGTTCCTGTACGGTACGTATCATAT
LOC_Os01g66650
OsAffx.9609.1.S1_at--839--6991Chr01:39040577..39040601 (25 bp)
GTACGTATCATATCGCTACCCACAT
LOC_Os01g66650
OsAffx.9609.1.S1_at--53--512Chr03:27859437..27859461 (25 bp)
ATCGCTACCCACATTGACAAGTACT
LOC_Os03g49000
OsAffx.9609.1.S1_at--549--5611Chr01:39040551..39040575 (25 bp)
GACAAGTACTACAACCGCTCTGATT
LOC_Os01g66650
OsAffx.9609.1.S1_at--80--7011Chr01:39040546..39040570 (25 bp)
GTACTACAACCGCTCTGATTATAGA
LOC_Os01g66650
OsAffx.9609.1.S1_at--939--10031Chr01:39040457..39040481 (25 bp)
TAGAGATCTTAGCACAACAATGAGT
LOC_Os01g66650
OsAffx.9609.1.S1_at--121--1491Chr01:39040447..39040471 (25 bp)
AGCACAACAATGAGTGGTTTGGAAT
LOC_Os01g66650
OsAffx.9609.1.S1_at--1117--7852Chr06:17842678..17842954 (25 bp)
GGTATTCAACTATGCACATTCCTCC
LOC_Os06g30760
OsAffx.9609.1.S1_at--891--10111Chr01:39039630..39039654 (25 bp)
TATGCACATTCCTCCCTTAGAAATG
LOC_Os01g66650
OsAffx.9609.1.S1_at--589--92Chr07:8560130..8560154 (25 bp)
ATTCCTCCCTTAGAAATGTCATTGA
LOC_Os07g14940
OsAffx.9609.1.S1_at--114--771Chr01:39039608..39039632 (25 bp)
ATGTCATTGAGCGATCATTAAATAG
LOC_Os01g66650
Target Sequence 
TGTTCCTGTACGGTACGTATCATATCGCTACCCACATTGACAAGTACTACAACCGCTCTGATTATAGAGATCTTAGCACA
ACAATGAGTGGTTTGGAATGGGTGTTTGCTGCTGCATGGAAGTACTATCTGGTGGACTCGGGGTACCCAAACCGGATTGG
TTACCTGGCGCCCTACAAGGGGACCAAGTACCATCTTCAAGAGTTTCAAAACGCCGCAGAACCAGAATGTAAACAAGAGG
TATTCAACTATGCACATTCCTCCCTTAGAAATGTCATTGAGCGATCATTAAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis