Browse Element(s) Details


Os.41415.2.S1_x_at

Description gb:NM_192547.1
DB_XREF= gi:34912177
GEN=P0700A11.15
TID=Os.41415.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41415 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative S-receptor kinase (P0700A11.15), mRNA.
PROD=putative S-receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4049911/11D-mannose binding lectin family protein, expressed
LOC_Os03g180201/11rhodanese-like family protein, putative
LOC_Os01g666101/11S-domain receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41415.2.S1_x_at--990--2691Chr01:23207486..23207510 (25 bp)
AAGCTCATGGGCCGCGACGACTCCA
LOC_Os01g40499
Os.41415.2.S1_x_at--62--9131Chr01:23207356..23207380 (25 bp)
TGCTGTTCGAGATCGTATCCGGGAG
LOC_Os01g40499
Os.41415.2.S1_x_at--220--5791Chr01:23207288..23207312 (25 bp)
GACGACGAGTACGACAGCGGCGCCG
LOC_Os01g40499
Os.41415.2.S1_x_at--951--7511Chr01:23207255..23207279 (25 bp)
GTGGAGGCGGACTTCTTCCCGTTGA
LOC_Os01g40499
Os.41415.2.S1_x_at--535--2051Chr01:23207245..23207269 (25 bp)
ACTTCTTCCCGTTGACGGCGGTGAG
LOC_Os01g40499
Os.41415.2.S1_x_at--1152--7752Chr03:10007904..10007982 (25 bp)
GGTGAGGATGCTGTTCGACGGCGAC
LOC_Os03g18020
Os.41415.2.S1_x_at--330--1951Chr01:23207203..23207227 (25 bp)
ACGGCGACCTCAGGGACGCGGTGGA
LOC_Os01g40499
Os.41415.2.S1_x_at--466--8091Chr01:23207190..23207214 (25 bp)
GGACGCGGTGGACGGCAATCTGGGC
LOC_Os01g40499
Os.41415.2.S1_x_at--9--5192Chr01:39015476..39015500 (25 bp)
GCAAGGTGGCGTGCTGGTGCGTGCA
LOC_Os01g66610
Os.41415.2.S1_x_at--254--8551Chr01:23207059..23207083 (25 bp)
TGGAGGGGCTCGTCGACGTCAACTT
LOC_Os01g40499
Os.41415.2.S1_x_at--2--4211Chr01:23207031..23207055 (25 bp)
CCCGATGCCGAGGTTGTTCATGGTA
LOC_Os01g40499
Target Sequence 
AAGCTCATGGGCCGCGACGACTCCAGCCGCGTGCTGACGACGACGCGCGGGACCGTGGGGTACCTGGCGCCGGAGTGGAT
CGCCGGCACGGCGGTCACGGCGAAGGCGGACGTGTACAGCTACGGGATGATGCTGTTCGAGATCGTATCCGGGAGGAGGA
ACGTGGAGCAGCGGCGGCGGCAGGCGGAGGCGGCCGACGACGACGAGTACGACAGCGGCGCCGGCGGCACGGTGGAGGCG
GACTTCTTCCCGTTGACGGCGGTGAGGATGCTGTTCGACGGCGACGGCGACCTCAGGGACGCGGTGGACGGCAATCTGGG
CGGGGAGGTCGACATGGGAGAGGTGGAGAGGGCGTGCAAGGTGGCGTGCTGGTGCGTGCAGGACGCGGAGAGCGCGAGGC
CGACCATGGGGATGGTGGTGAAGGCCCTGGAGGGGCTCGTCGACGTCAACTTTCCCCCGATGCCGAGGTTGTTCATGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41415.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis