Browse Element(s) Details


OsAffx.21411.1.S1_at

Description gb:NM_192548.1
DB_XREF= gi:34912179
GEN=P0700A11.16
TID=OsAffx.21411.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700A11.16 (P0700A11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g404999/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21411.1.S1_at--185--8091NONE
GGAGCGGGCCAGGACTCGAAAAACA
NONE
OsAffx.21411.1.S1_at--685--9351Chr01:23214931..23214955 (25 bp)
TCGAAAAACAATTCCCAACAGGCCT
LOC_Os01g40499
OsAffx.21411.1.S1_at--1026--871Chr01:23214912..23214936 (25 bp)
AGGCCTCGAAAAACAGCGGCACCGC
LOC_Os01g40499
OsAffx.21411.1.S1_at--1095--2551Chr01:23214889..23214910 (22 bp)
AACGACCACGGACGACCTTTCTCTG
LOC_Os01g40499
OsAffx.21411.1.S1_at--963--3671NONE
CTTTCTCTGGCGCTGATCATCAGCA
NONE
OsAffx.21411.1.S1_at--979--3471Chr01:23213481..23213505 (25 bp)
CAGGTTCGCGGTAGGCTTCTTCCAG
LOC_Os01g40499
OsAffx.21411.1.S1_at--845--9571Chr01:23213235..23213488 (25 bp)
TCTTCCAGCCAGATGTACGCACACA
LOC_Os01g40499
OsAffx.21411.1.S1_at--359--9091Chr01:23213187..23213211 (25 bp)
TGCTCACACACCTACGAAAATGTCC
LOC_Os01g40499
OsAffx.21411.1.S1_at--1009--2971Chr01:23213169..23213193 (25 bp)
AATGTCCTAACACATACTCAAAGAG
LOC_Os01g40499
OsAffx.21411.1.S1_at--487--5271Chr01:23212061..23212085 (25 bp)
GAATGCGACGATGGCTCTCGAGGAA
LOC_Os01g40499
OsAffx.21411.1.S1_at--1087--2891Chr01:23212027..23212051 (25 bp)
AAGGTCTAGCCAGATTTGGCCTCCA
LOC_Os01g40499
Target Sequence 
GGAGCGGGCCAGGACTCGAAAAACAATTCCCAACAGGCCTCGAAAAACAGCGGCACCGCCAACGACCACGGACGACCTTT
CTCTGGCGCTGATCATCAGCAGCTGCCTGCTGCTGTGGCCGCACCAAGGGGTGGCTCTGGCTCCGTCGCGCGCCGCCGCC
ACCGATACCTTGGCCGTCGGCCGGCCGCTTTCAGGCGGGCGGAGGCTGGTGTCCAAGGGTGGCAGGTTCGCGGTAGGCTT
CTTCCAGCCAGATGTACGCACACACCATCACTACATACGCAACCCCATGCTCACACACCTACGAAAATGTCCTAACACAT
ACTCAAAGAGACGAGAATGCGACGATGGCTCTCGAGGAAGGCAGTGGCAAGGTCTAGCCAGATTTGGCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis