Browse Element(s) Details


OsAffx.23609.1.S1_at

Description gb:NM_192551.1
DB_XREF= gi:34912185
GEN=P0700A11.19
TID=OsAffx.23609.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700A11.19 (P0700A11.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g405408/11lectin receptor-type protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23609.1.S1_at--616--9471Chr01:23226789..23226813 (25 bp)
TCTTCACCCAAAACCTACTAGTTCT
LOC_Os01g40540
OsAffx.23609.1.S1_at--561--2411Chr01:23226818..23226842 (25 bp)
AAAATCCCCAAATCGTCAGGTCTGC
LOC_Os01g40540
OsAffx.23609.1.S1_at--849--3291Chr01:23226826..23226850 (25 bp)
CAAATCGTCAGGTCTGCGGGAGGCA
LOC_Os01g40540
OsAffx.23609.1.S1_at--177--4611Chr01:23226888..23226912 (25 bp)
GCGACGAGCAGTTTGTCCTCAACGG
LOC_Os01g40540
OsAffx.23609.1.S1_at--165--3432Chr01:23226896..23226920 (25 bp)
CAGTTTGTCCTCAACGGGTTCACCG
LOC_Os01g40540
OsAffx.23609.1.S1_at--35--4531Chr01:23226920..23226944 (25 bp)
GCCGCGAATCTCAGCTTCGATGACA
LOC_Os01g40540
OsAffx.23609.1.S1_at--884--4911Chr01:23226933..23226957 (25 bp)
GCTTCGATGACATGGCGACGGTGAC
LOC_Os01g40540
OsAffx.23609.1.S1_at--440--7791Chr01:23227021..23227045 (25 bp)
GGTGCCGCTTCAGTTCCACAGGGCG
LOC_Os01g40540
OsAffx.23609.1.S1_at--51--3413Chr01:23227293..23227317 (25 bp)
CAGACTCCAAAACCATTAACATCGT
NONE
OsAffx.23609.1.S1_at--165--6831Chr01:23227316..23227340 (25 bp)
GTTTCCAACTTTAGACGATATATTA
NONE
OsAffx.23609.1.S1_at--710--1351Chr01:23227340..23227364 (25 bp)
AGAGAATCCAATTTAATAGCACAAT
NONE
Target Sequence 
TCTTCACCCAAAACCTACTAGTTCTTCCAAAAATCCCCAAATCGTCAGGTCTGCGGGAGGCAGCGCCGACGGGCTGCGGA
GGTTTGCGGGAGGCGGAAGGCGACGAGCAGTTTGTCCTCAACGGGTTCACCGCCGCGAATCTCAGCTTCGATGACATGGC
GACGGTGACCCCGAACGGGCTGCTCATGTTGACCAACGGCACGAACCAGCTCAAGGGCCACGCCTTCTTCCCGGTGCCGC
TTCAGTTCCACAGGGCGCCCAACAGCACGGCGATGCAGTCCTTCTCCACGGCCTTCGTCATCGGCATCATCGGCGCGTTC
GAGGACCAGGGCAGCGGCAACCTGGCGGCGGCAGNNNNNNNCNNNANNGNNGNATNNTCAGACTCCAAAACCATTAACAT
CGTTTCCAACTTTAGACGATATATTAGAGAATCCAATTTAATAGCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis