Browse Element(s) Details


OsAffx.30059.1.S1_x_at

Description tigr:9629.m03864
TID=OsAffx.30059.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4048011/11C2 domain-containing protein, putative, expressed
LOC_Os04g545101/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30059.1.S1_x_at--563--7251Chr01:23195858..23195882 (25 bp)
GTCCTCGTCTGGTACCCGGAGCTGG
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--949--9431Chr01:23195851..23195875 (25 bp)
TCTGGTACCCGGAGCTGGCCGTGCC
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--695--9591Chr01:23195803..23195827 (25 bp)
TCATCGGCGTCTGGTACTACCGGTT
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--797--9431Chr01:23195800..23195824 (25 bp)
TCGGCGTCTGGTACTACCGGTTCCG
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--9--4231Chr01:23195734..23195758 (25 bp)
CCGACACGGTGGAGGCCGACGACCT
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--729--6173Chr04:32205497..32205676 (25 bp)
GAGGAGGAGTTCGACGCCGTGCCGC
LOC_Os04g54510
OsAffx.30059.1.S1_x_at--901--7551Chr01:23195668..23195692 (25 bp)
GGGCGCGCTACGAGAGGCTGCGGAC
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--948--891Chr01:23195584..23195608 (25 bp)
AGGCGCTGGTGAGCTGGAGGGACCC
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--737--4411Chr01:23195555..23195579 (25 bp)
GCCAGCCGGATCTTCGTCGGCGTCT
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--778--4731Chr01:23195511..23195535 (25 bp)
GCTGTACGCCATGCCGTCCAAGATG
LOC_Os01g40480
OsAffx.30059.1.S1_x_at--651--4332Chr08:604700..604927 (25 bp)
CCATGCCGTCCAAGATGGTGGCCGT
NONE
Target Sequence 
GTCCTCGTCTGGTACCCGGAGCTGGCCGTGCCCACGGCGTCGCTCTACGTCTTCCTCATCGGCGTCTGGTACTACCGGTT
CCGGCCGCGCGGCCCCGCCGGCATGGACGCGCGGCTGTCGCAGGCCGACACGGTGGAGGCCGACGACCTGGAGGAGGAGT
TCGACGCCGTGCCGCCGCCGGAGGTGCTCCGGGCGCGCTACGAGAGGCTGCGGACGCTGGCGGGGCGGGTGCAGCGCGTC
ATGGGCGACGTCGCGGCGCAGGGGGAGAGGGTGCAGGCGCTGGTGAGCTGGAGGGACCCGCGCGCCAGCCGGATCTTCGT
CGGCGTCTGCCTCGCCGTCGCCGTCGCGCTGTACGCCATGCCGTCCAAGATGGTGGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30059.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis