Browse Element(s) Details


OsAffx.26476.1.S1_x_at

Description gb:NM_192542.1
DB_XREF= gi:34912167
GEN=P0700A11.10
TID=OsAffx.26476.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700A11.10 (P0700A11.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4046011/11hypothetical protein
LOC_Os04g458906/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26476.1.S1_x_at--518--5371Chr01:23174600..23174624 (25 bp)
GAAGAACTCACTTGACGAAATCCTA
LOC_Os01g40460
OsAffx.26476.1.S1_x_at--1051--7471Chr01:23174549..23174573 (25 bp)
GTGTGGACTTAGCTTTCATCGCAAG
LOC_Os01g40460
OsAffx.26476.1.S1_x_at--77--9692Chr04:26953389..26953413 (25 bp)
TCACATTACATGTTTTGGTTGTCAT
LOC_Os04g45890
OsAffx.26476.1.S1_x_at--1145--2871Chr01:23174401..23174425 (25 bp)
AAGGGACACTTTGTCTCCGTGTGCA
LOC_Os01g40460
OsAffx.26476.1.S1_x_at--40--2492Chr04:26953313..26953337 (25 bp)
AACTTCAAATTGAGGCAAACCGGCA
LOC_Os04g45890
OsAffx.26476.1.S1_x_at--736--6212Chr04:26953261..26953326 (25 bp)
GAGGCCAAAACCTAACTTGCTACAA
LOC_Os04g45890
OsAffx.26476.1.S1_x_at--80--1032Chr04:26953197..26953221 (25 bp)
AGGTAATACTCCTAAGCCTAATATT
LOC_Os04g45890
OsAffx.26476.1.S1_x_at--394--8811Chr01:23174156..23174180 (25 bp)
TGTTGGTTTACCTAGACTTGCATCT
LOC_Os01g40460
OsAffx.26476.1.S1_x_at--711--5671Chr01:23174142..23174166 (25 bp)
GACTTGCATCTAGAAGGAGGACCAT
LOC_Os01g40460
OsAffx.26476.1.S1_x_at--1054--933Chr04:28755766..28756150 (25 bp)
AGGACCATTTGGGTGCCTCGTATTT
NONE
OsAffx.26476.1.S1_x_at--95--7252Chr04:26953073..26953097 (25 bp)
GTGCCTCGTATTTTGGTAACTAACA
LOC_Os04g45890
Target Sequence 
GAAGAACTCACTTGACGAAATCCTAAGCAAGCAAAAGAGCTCAAATGACAAGTGTGGACTTAGCTTTCATCGCAAGGAGA
ATGCTAAGAAGACAAGGCACATGCCTAAATATGCAAGGAAGCATGCATACTTAAGAAAGGATGGAAAGAAAAATGNAANN
NNNNANNANCCTCACATTACATGTTTTGGTTGTCATGAGAAGGGACACTTTGTCTCCGTGTGCACAAACATGAAGGATGA
GAAGTGCAACTTCAAATTGAGGCAAACCGGCAAGAAGCAAGACAAAAAGACAAGTCATAGAGGCCAAAACCTAACTTGCT
ACAATTGCTGCAAAAAGGGACATATTGGTAAAAATTGTCCCATAGGTAATACTCCTAAGCCTAATATTATTTTTGATGAT
TATGTGCTTAGAAAAAATAGGCAAGGCAATGTGTTTGCTAGATATGTTGGTTTACCTAGACTTGCATCTAGAAGGAGGAC
CATTTGGGTGCCTCGTATTTTGGTAACTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26476.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis