Browse Element(s) Details


OsAffx.23606.1.S1_at

Description tigr:9629.m03859
TID=OsAffx.23606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4043010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23606.1.S1_at--221--4091Chr01:23152913..23152937 (25 bp)
CGACGACCGGTCTTGCATGATCACG
LOC_Os01g40430
OsAffx.23606.1.S1_at--49--9591Chr01:23152903..23152927 (25 bp)
TCTTGCATGATCACGGCTGCGTCGA
LOC_Os01g40430
OsAffx.23606.1.S1_at--149--8431Chr01:23152864..23152888 (25 bp)
GGCCGGGTCGTACTCAGAACACGAT
LOC_Os01g40430
OsAffx.23606.1.S1_at--686--1431Chr01:23152849..23152873 (25 bp)
AGAACACGATGCAGCGCACCCACGG
LOC_Os01g40430
OsAffx.23606.1.S1_at--1097--5071NONE
GCACCCACGGTGAAGGACGGTTGTC
NONE
OsAffx.23606.1.S1_at--1128--5011Chr01:23152017..23152041 (25 bp)
GCAGGTGCAGCGCTGCAACCACGAC
LOC_Os01g40430
OsAffx.23606.1.S1_at--990--7131Chr01:23151864..23151888 (25 bp)
GTCTTCGACGTGGTCGGAGCTTCAG
LOC_Os01g40430
OsAffx.23606.1.S1_at--1046--831Chr01:23151813..23151837 (25 bp)
ATGGAGCCAGAGAAACTACCCTATT
LOC_Os01g40430
OsAffx.23606.1.S1_at--419--1811Chr01:23151796..23151820 (25 bp)
ACCCTATTCAGGCAGATGTCGTGGC
LOC_Os01g40430
OsAffx.23606.1.S1_at--310--891Chr01:23151769..23151793 (25 bp)
AGGCGATCTGGGACCCCAAGTTCCA
LOC_Os01g40430
OsAffx.23606.1.S1_at--503--1571Chr01:23151719..23151743 (25 bp)
AGCTACGTCCGTGACCGTGAGCAGA
LOC_Os01g40430
Target Sequence 
CGACGACCGGTCTTGCATGATCACGGCTGCGTCGACGGCGAATCGGCCTGGCCGGGTCGTACTCAGAACACGATGCAGCG
CACCCACGGTGAAGGACGGTTGTCAATGGCGCAAGTACGGGCAGAAGACGGCGAAGGGCAACCCGTGGCCGCGGGGCTAC
TACCGGTGCACCGGCGCGCCGGGGTGCCCCGTGAAGAAGCAGGTGCAGCGCTGCAACCACGACACCTCCGTCCTCGTCAC
CACCTACGATGGCGTCCACAACCACCCCATCACGCCCTACGCCGCCGCGCTCCCTCCGTCGTCGTCGTCCTCCTCATCGG
CGGCGGTAGCCATGCTCGCCTCCTCCTCGTCGTCTTCGACGTGGTCGGAGCTTCAGCGCGCGATGCCGGCGGCGCAGTCG
TCATGGAGCCAGAGAAACTACCCTATTCAGGCAGATGTCGTGGCGAAGGCGATCTGGGACCCCAAGTTCCAGGCGACGGT
GGCGGCCGCCGTCGCGAGCTACGTCCGTGACCGTGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis