Browse Element(s) Details


Os.9530.2.S1_x_at

Description gb:NM_192539.1
DB_XREF= gi:34912161
GEN=P0712E02.24
TID=Os.9530.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0712E02.24 (P0712E02.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0712E02.24 (P0712E02.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4042011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9530.2.S1_x_at--1089--10251Chr01:23148116..23148140 (25 bp)
TTTGATTATATTTCAGCGCTCCCTC
LOC_Os01g40420
Os.9530.2.S1_x_at--399--7631Chr01:23148081..23148105 (25 bp)
GGGACTTCCATTTATGTCACTTGAT
LOC_Os01g40420
Os.9530.2.S1_x_at--1096--7252Chr05:17375667..17375691 (25 bp)
GTGCCTGTAGTAGAAGGTCCCAACA
NONE
Os.9530.2.S1_x_at--370--91Chr01:23147761..23147785 (25 bp)
ATTCGCTTTTTGTTACTTAGGCCTG
LOC_Os01g40420
Os.9530.2.S1_x_at--327--10091Chr01:23147744..23147768 (25 bp)
TAGGCCTGACTTGTTTTCGAATTTC
LOC_Os01g40420
Os.9530.2.S1_x_at--762--251Chr01:23147598..23147622 (25 bp)
ATAGGTTCCACCGTTTCTGATTCAG
LOC_Os01g40420
Os.9530.2.S1_x_at--552--4912Chr05:17375889..17375913 (25 bp)
GCTTCTCTTGGCAGCGTGATTGACA
NONE
Os.9530.2.S1_x_at--803--2392Chr05:17375927..17375953 (25 bp)
AATAACCCACCGGATATACGTCGTG
NONE
Os.9530.2.S1_x_at--480--7451Chr01:23147447..23147471 (25 bp)
GTGTCGTGACACTGCGAGACGTGAT
LOC_Os01g40420
Os.9530.2.S1_x_at--561--5992Chr05:17375997..17376023 (25 bp)
GAGACGTGATCTCTTGCTTTATCTA
NONE
Os.9530.2.S1_x_at--9--8931Chr01:23147407..23147431 (25 bp)
TGAGCCACCTGGTTACTGTGACAAC
LOC_Os01g40420
Target Sequence 
TTTGATTATATTTCAGCGCTCCCTCTCTCGGACTTGGGACTTCCATTTATGTCACTTGATGAGGTTATCACTGTTAACAG
TGGTGATCTAATCTTGGAAGCTTTTAAGTGCATGAAGGACAACAAAATTGGTGGTGTGCCTGTAGTAGAAGGTCCCAACA
AAAAACTTGTTGGCAGTGTGAGCATAAGGGATATTCGCTTTTTGTTACTTAGGCCTGACTTGTTTTCGAATTTCAGGCAA
CTTACTGTCATGGAGTTCATGAAGACCATAGGTTCCACCGTTTCTGATTCAGGGAACGGCCTGGTGAAGCCACCTCTCAC
CTGTTCGCCTGACGCTTCTCTTGGCAGCGTGATTGACAGCATTGCATCAAGAATAACCCACCGGATATACGTCGTGGACG
GTGACTTCGAGGTTGTTGGTGTCGTGACACTGCGAGACGTGATCTCTTGCTTTATCTATGAGCCACCTGGTTACTGTGAC
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9530.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis