Browse Element(s) Details


OsAffx.11404.1.S1_s_at

Description gb:NM_192533.1
DB_XREF= gi:34912149
GEN=P0712E02.17
TID=OsAffx.11404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0712E02.17 (P0712E02.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4036011/11amino acid transporter family protein, putative
LOC_Os01g403801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11404.1.S1_s_at--586--8471Chr01:23112880..23112904 (25 bp)
TGGCGGGAAGCAACCTCTAGAATCT
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--492--10011Chr01:23112897..23112921 (25 bp)
TAGAATCTGAGCAGGTTGCCCACCA
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--453--9891Chr01:23112944..23112968 (25 bp)
TACTTCTTCATCTATTTCATCGGCC
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--85--1791Chr01:23112983..23113007 (25 bp)
ACCGTGCACTCCTTGATGAAGTCTA
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--481--3471Chr01:23114479..23114503 (25 bp)
CAGGTGACGCTGAACTTACCCTCGG
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--290--2171Chr01:23114536..23114560 (25 bp)
ACACTGATCTCCCTGCTAGAGAAGT
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--905--1171Chr01:23114558..23114582 (25 bp)
AGTACGGACTCGAGATCCAGCTCAT
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--889--9211Chr01:23114573..23114597 (25 bp)
TCCAGCTCATTGCAACGGTGATAAA
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--96--9851Chr01:23114594..23114618 (25 bp)
TAAAGGAGAAGCTGTCGTTGACGAC
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--298--2211Chr01:23114642..23114666 (25 bp)
ACAACAGGCAGACCAGGGTGCTCAC
LOC_Os01g40360
OsAffx.11404.1.S1_s_at--964--1492Chr01:23125554..23125578 (25 bp)
AGCACAGCCGTCGTTGTCAGCACGG
LOC_Os01g40380
Target Sequence 
TGGCGGGAAGCAACCTCTAGAATCTGAGCAGGTTGCCCACCACCTGCCCACCACCCTCAGCCTCTACTTCTTCATCTATT
TCATCGGCCATGGCGTCTTCCCGACCGTGCACTCCTTGATGAAGTCTAAGAAGGATTTTCCTAAGGTTTTGCTGATCTCT
TCGGTGCTGTGCAGTCTCAATTACGCAGTGACAACATTATTGAGATATCTGATCTATGGTGAGGATGTGCAGGCGCAGGT
GACGCTGAACTTACCCTCGGGGAAGCTATACACCAGGATCACCATCCTGACGACACTGATCTCCCTGCTAGAGAAGTACG
GACTCGAGATCCAGCTCATTGCAACGGTGATAAAGGAGAAGCTGTCGTTGACGACGGCAGCGGCGACGGACGCCGAGAAC
AACAGGCAGACCAGGGTGCTCACCAGCACAGCCGTCGTTGTCAGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11404.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis