Browse Element(s) Details


Os.45995.1.S1_x_at

Description gb:NM_192531.1
DB_XREF= gi:34912145
GEN=P0712E02.15
TID=Os.45995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0712E02.15 (P0712E02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0712E02.15 (P0712E02.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4034011/11SIT4 phosphatase-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45995.1.S1_x_at--67--851Chr01:23108475..23108496 (22 bp)
ATGGCAGTTCCCTCTTTACAAATTC
LOC_Os01g40340
Os.45995.1.S1_x_at--618--1011Chr01:23108524..23108548 (25 bp)
AGGTATTACTGACCGTTTGGCTGCG
LOC_Os01g40340
Os.45995.1.S1_x_at--103--9251Chr01:23108551..23108575 (25 bp)
TCCTTCGTCTTCACCTAATTCAGAG
LOC_Os01g40340
Os.45995.1.S1_x_at--94--991Chr01:23108574..23108598 (25 bp)
AGGAGATTTCCCCAGACACTGAGGA
LOC_Os01g40340
Os.45995.1.S1_x_at--164--9831Chr01:23108701..23108725 (25 bp)
TAAACACCCGGCTACTAGCACGGAG
LOC_Os01g40340
Os.45995.1.S1_x_at--249--1331Chr01:23108809..23108833 (25 bp)
AGAGGCAGCACCAGTATCTTCAGCC
LOC_Os01g40340
Os.45995.1.S1_x_at--272--1671Chr01:23108830..23108854 (25 bp)
AGCCCCATCTTCTGATGAGGTGCAG
LOC_Os01g40340
Os.45995.1.S1_x_at--481--5471Chr01:23108862..23108886 (25 bp)
GAACTGCAGATGAACCCACTGGCTC
LOC_Os01g40340
Os.45995.1.S1_x_at--847--3331Chr01:23108878..23108902 (25 bp)
CACTGGCTCATCTGATTCGGGTAAT
LOC_Os01g40340
Os.45995.1.S1_x_at--337--8731Chr01:23108905..23108929 (25 bp)
TGTCTCAGAAGTTTTGCCAGATCCT
LOC_Os01g40340
Os.45995.1.S1_x_at--892--51Chr01:23108942..23108966 (25 bp)
ATTGATCCAGCCAACACAGCAGTAT
LOC_Os01g40340
Target Sequence 
ATGGCAGTTCCCTCTTTACAAATTCGAATTGGTTTACATTTGATGGAGAGAGAGGTATTACTGACCGTTTGGCTGCGGTT
CCTTCGTCTTCACCTAATTCAGAGGAGATTTCCCCAGACACTGAGGAAACTGATGATGGTGAAGTCGTCATTGGTACTGA
GGATCATATGGATACTGTCAATCTTGGGAATGGTCCTATCGAGGAGGCAGAAGATGCAGCGGAATTTACTAAACACCCGG
CTACTAGCACGGAGGATGAGCAACTACAAAACGCTGAAGGGATTGAGCGACACCTGGATGTTTCAAATGGTGATGCTGAA
GCTAGTACAGAAGCTGCAGAGGCAGCACCAGTATCTTCAGCCCCATCTTCTGATGAGGTGCAGACAGAGAGAACTGCAGA
TGAACCCACTGGCTCATCTGATTCGGGTAATTCTGTCTCAGAAGTTTTGCCAGATCCTGAAGATAGTAGCATTGATCCAG
CCAACACAGCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45995.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis