Browse Element(s) Details


Os.8571.1.S1_s_at

Description gb:NM_192526.1
DB_XREF= gi:34912135
GEN=OSJNBb0024F06.20
TID=Os.8571.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0024F06.20 (OSJNBb0024F06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.20 (OSJNBb0024F06.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4031010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8571.1.S1_s_at--429--8191Chr01:23082176..23082200 (25 bp)
GGAAGAAATGGCTGCCGTCCAAGCA
LOC_Os01g40310
Os.8571.1.S1_s_at--106--2311Chr01:23082171..23082195 (25 bp)
AAATGGCTGCCGTCCAAGCAGCAAT
LOC_Os01g40310
Os.8571.1.S1_s_at--384--8491Chr01:23082168..23082192 (25 bp)
TGGCTGCCGTCCAAGCAGCAATCTC
LOC_Os01g40310
Os.8571.1.S1_s_at--72--1771Chr01:23082142..23082166 (25 bp)
ACCTGCTGCTCTTCGTCTTGCCTGT
LOC_Os01g40310
Os.8571.1.S1_s_at--464--1031Chr01:23082078..23082102 (25 bp)
AGGTCACGGCCATGGCTCCCCAGAA
LOC_Os01g40310
Os.8571.1.S1_s_at--54--4431NONE
GCCATGGCTCCCCAGAAGAAGGTGA
NONE
Os.8571.1.S1_s_at--909--851Chr01:23081968..23082091 (25 bp)
ATGGCTCCCCAGAAGAAGGTGAACA
LOC_Os01g40310
Os.8571.1.S1_s_at--955--2871Chr01:23081953..23081976 (24 bp)
AAGGTGAACAGGTACGACGAGAAGT
LOC_Os01g40310
Os.8571.1.S1_s_at--63--9951Chr01:23081941..23081965 (25 bp)
TACGACGAGAAGTGGTCGAAGCAGT
LOC_Os01g40310
Os.8571.1.S1_s_at--468--8551Chr01:23081877..23081901 (25 bp)
TGGAGGTGGACGTGTTCAAGAAGCT
LOC_Os01g40310
Os.8571.1.S1_s_at--625--1471Chr01:23081823..23081847 (25 bp)
AGAAGGCCGGGCTGCTGTCCAGGGC
LOC_Os01g40310
Target Sequence 
GGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCG
CGAGGAGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGTGAACAGGTACGACGAGAAGTGGTCGAAGCAG
TGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGT
GCTGAGCACGGTGGAGAAGGCCGGGCTGCTGTCCAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8571.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis