Browse Element(s) Details


Os.8965.1.S1_at

Description gb:AK069774.1
DB_XREF= gi:32979798
TID=Os.8965.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0024F06.18 (OSJNBb0024F06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028H21, full insert sequence.
FL= gb:AK069774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4028011/11integral to membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8965.1.S1_at--1133--9651Chr01:23073442..23073466 (25 bp)
TCAGCGGGCTTCTTGGCGACAGGAA
LOC_Os01g40280
Os.8965.1.S1_at--968--931Chr01:23073462..23073486 (25 bp)
AGGAACCGGCCACTCATGTACATAC
LOC_Os01g40280
Os.8965.1.S1_at--805--751Chr01:23073477..23073501 (25 bp)
ATGTACATACTACTCCAAGCGCTGT
LOC_Os01g40280
Os.8965.1.S1_at--483--231Chr01:23073534..23073558 (25 bp)
ATATTCCTGTCCTTCCAGATGCATG
LOC_Os01g40280
Os.8965.1.S1_at--210--6331Chr01:23073551..23073575 (25 bp)
GATGCATGTGGTCTTCCAGATACTC
LOC_Os01g40280
Os.8965.1.S1_at--990--1251Chr01:23073568..23073592 (25 bp)
AGATACTCAAGGTGTGCGCGTCGAC
LOC_Os01g40280
Os.8965.1.S1_at--855--8171Chr01:23073595..23073619 (25 bp)
GGAACGGTGGAAGCTTCATCCTGGA
LOC_Os01g40280
Os.8965.1.S1_at--308--6351Chr01:23073623..23073647 (25 bp)
GATGCCTAGGCAAGTCGTCCAGAAG
LOC_Os01g40280
Os.8965.1.S1_at--1036--1491Chr01:23073739..23073763 (25 bp)
AGCACTCATCCGAGCATAGCTAAGT
LOC_Os01g40280
Os.8965.1.S1_at--181--6431Chr01:23073912..23073936 (25 bp)
GATCTATTCAGACTCCAGGCAGGGA
LOC_Os01g40280
Os.8965.1.S1_at--173--10391Chr01:23073965..23073989 (25 bp)
TTTTCCCAGTCAACCCATGATATTC
LOC_Os01g40280
Target Sequence 
TCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATGTACATACTACTCCAAGCGCTGTTCACGGTGGCGACAATGGCG
CTTACCGTTCCCATATTCCTGTCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGG
TGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAG
AGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAA
GTCACTGAAAAACCNAAACCATCGCAAACNGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACNTGTGGATAGCTTCT
CTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTAT
TCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis