Browse Element(s) Details


OsAffx.23600.2.S1_at

Description tigr:9629.m03840
TID=OsAffx.23600.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4025011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40240NANA1+23032731..23034317F-box domain containing protein
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23600.2.S1_at--577--9991Chr01:23054115..23054139 (25 bp)
TAGCCTTAGTTCTTCTGATCACAGT
LOC_Os01g40250
OsAffx.23600.2.S1_at--652--6731Chr01:23054123..23054147 (25 bp)
GTTCTTCTGATCACAGTGCATTCCT
LOC_Os01g40250
OsAffx.23600.2.S1_at--638--6451Chr01:23054131..23054155 (25 bp)
GATCACAGTGCATTCCTTGAGGGTT
LOC_Os01g40250
OsAffx.23600.2.S1_at--386--7111Chr01:23054138..23054162 (25 bp)
GTGCATTCCTTGAGGGTTTTGAATT
LOC_Os01g40250
OsAffx.23600.2.S1_at--412--2751Chr01:23054182..23054206 (25 bp)
AAGAACGCATTTCTCATCTGCACTT
LOC_Os01g40250
OsAffx.23600.2.S1_at--452--7031Chr01:23054221..23054245 (25 bp)
GTAAATGGATCTAACCTTGATGGAG
LOC_Os01g40250
OsAffx.23600.2.S1_at--252--8031Chr01:23054242..23054266 (25 bp)
GGAGGTGAAGAGCTTACATCTTTGT
LOC_Os01g40250
OsAffx.23600.2.S1_at--545--2091Chr01:23054257..23054281 (25 bp)
ACATCTTTGTTAGTTTCTTCGCTCC
LOC_Os01g40250
OsAffx.23600.2.S1_at--531--10051Chr01:23054267..23054291 (25 bp)
TAGTTTCTTCGCTCCTGAAGAGGAT
LOC_Os01g40250
OsAffx.23600.2.S1_at--943--5031Chr01:23054307..23054425 (25 bp)
GCAGATGCAGGATACGCAGATGAAG
LOC_Os01g40250
OsAffx.23600.2.S1_at--427--2851Chr01:23054541..23054686 (25 bp)
AAGTCATCAGTGATGATGTCAAGCA
LOC_Os01g40250
Target Sequence 
TAGCCTTAGTTCTTCTGATCACAGTGCATTCCTTGAGGGTTTTGAATTGTTTGGTTCAACAAAAGCAAAGAACGCATTTC
TCATCTGCACTTCTGCATCTACTGATGTAAATGGATCTAACCTTGATGGAGGTGAAGAGCTTACATCTTTGTTAGTTTCT
TCGCTCCTGAAGAGGATGGGAAAGATTGCAATGCAGATGCAGGATACGCAGATGAAGATTGTATTCAATTGCTTCAGCAT
GATTTCATCAGCGCTTGGTGCTGAAGTATCACTATCCTATGCTAACCTCTTCTTGGGCCCCTTATATAAAGTTTGTGAAG
GATTTGCTGGGAAAGTCATCAGTGATGATGTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23600.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis