Browse Element(s) Details


Os.30657.1.S1_at

Description gb:AY341846.1
DB_XREF= gi:33519179
TID=Os.30657.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30657 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
PROD=WRKY5
FL= gb:AK108522.1 gb:AY341846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4026011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40240NANA1+23032731..23034317F-box domain containing protein
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30657.1.S1_at--1143--5151Chr01:23059293..23059317 (25 bp)
GCAAGAACGGCAGCAAGATCGCGTT
LOC_Os01g40260
Os.30657.1.S1_at--817--1271Chr01:23059308..23059332 (25 bp)
AGATCGCGTTCAAGACGAGGTCGGA
LOC_Os01g40260
Os.30657.1.S1_at--230--991Chr01:23059717..23059741 (25 bp)
AGGAGGCCGAGGTGATCGCTCTCTT
LOC_Os01g40260
Os.30657.1.S1_at--700--3931Chr01:23059803..23059827 (25 bp)
CGGCGGCGACAACTGACTAGCTAGT
LOC_Os01g40260
Os.30657.1.S1_at--10--10011Chr01:23059820..23059844 (25 bp)
TAGCTAGTGTGAGTCCTGGGCCGTA
LOC_Os01g40260
Os.30657.1.S1_at--664--8651Chr01:23059836..23059860 (25 bp)
TGGGCCGTACAGGAATGGACAATTA
LOC_Os01g40260
Os.30657.1.S1_at--688--2231Chr01:23059854..23059878 (25 bp)
ACAATTAGTTTGTCTCCGATCGAGG
LOC_Os01g40260
Os.30657.1.S1_at--1143--6351Chr01:23059871..23059895 (25 bp)
GATCGAGGACCAAGGCGACCTGAAT
LOC_Os01g40260
Os.30657.1.S1_at--269--5811Chr01:23059887..23059911 (25 bp)
GACCTGAATCAAAATTACGGCCCAT
LOC_Os01g40260
Os.30657.1.S1_at--263--1931Chr01:23059903..23059927 (25 bp)
ACGGCCCATCGATATATAGTAGGTC
LOC_Os01g40260
Os.30657.1.S1_at--251--6931Chr01:23059921..23059945 (25 bp)
GTAGGTCGTTTAATTCATCGAAATT
LOC_Os01g40260
Target Sequence 
GCAAGAACGGCAGCAAGATCGCGTTCAAGACGAGGTCGGAGGTGGACGTGCTGGACGACGGCTACCGGTGGAGGAAGTAC
GGCAAGAAGATGGTCAAGAACAGCCCCAACCCAAGGAACTACTACCGGTGCTCGAGCGAGGGGTGCCGCGTGAAGAAGCG
GGTGGAGCGCGCCCGGGACGACGCGCGCTTCGTCGTCACCACCTACGACGGCGTCCACAACCACCCGGCGCCGCTGCACC
TCAGGCCGCAGCTGCCGCCGCCCGGCGGCTACTCGATCGCCGGGGCACCGGCCGTGGTGGCGCCGCACGGCCGCCTCGGG
CTGGAGGAGGCCGAGGTGATCGCTCTCTTCAGGGGCACCACCGCCACCTCGCTGCTGCTTCCTTGACCGGCCAGTCCGAC
GCGGCGGCGCCGGCGGCGACAACTGACTAGCTAGTGTGAGTCCTGGGCCGTACAGGAATGGACAATTAGTTTGTCTCCGA
TCGAGGACCAAGGCGACCTGAATCAAAATTACGGCCCATCGATATATAGTAGGTCGTTTAATTCATCGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis