Browse Element(s) Details


Os.53702.1.S1_x_at

Description gb:AK099180.1
DB_XREF= gi:32984389
TID=Os.53702.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103B06, full insert sequence.
FL= gb:AK099180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4031010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53702.1.S1_x_at--378--911Chr01:23082091..23082115 (25 bp)
AGGCGGCGCTTCAAGGTCACGGCCA
LOC_Os01g40310
Os.53702.1.S1_x_at--463--1031Chr01:23082078..23082102 (25 bp)
AGGTCACGGCCATGGCTCCCCAGAA
LOC_Os01g40310
Os.53702.1.S1_x_at--389--1952Chr07:20483949..20484141 (25 bp)
ACGGCCATGGCTCCCCAGAAGAAGG
NONE
Os.53702.1.S1_x_at--53--4431NONE
GCCATGGCTCCCCAGAAGAAGGTGA
NONE
Os.53702.1.S1_x_at--910--851Chr01:23081968..23082091 (25 bp)
ATGGCTCCCCAGAAGAAGGTGAACA
LOC_Os01g40310
Os.53702.1.S1_x_at--956--2871Chr01:23081953..23081976 (24 bp)
AAGGTGAACAGGTACGACGAGAAGT
LOC_Os01g40310
Os.53702.1.S1_x_at--62--9951Chr01:23081941..23081965 (25 bp)
TACGACGAGAAGTGGTCGAAGCAGT
LOC_Os01g40310
Os.53702.1.S1_x_at--469--8551Chr01:23081877..23081901 (25 bp)
TGGAGGTGGACGTGTTCAAGAAGCT
LOC_Os01g40310
Os.53702.1.S1_x_at--887--8531Chr01:23081853..23081877 (25 bp)
TGGAGAGGCGGAAGGTGCTGAGCAC
LOC_Os01g40310
Os.53702.1.S1_x_at--624--1471Chr01:23081823..23081847 (25 bp)
AGAAGGCCGGGCTGCTGTCCAGGGC
LOC_Os01g40310
Os.53702.1.S1_x_at--473--511Chr01:23081507..23081531 (25 bp)
ATCGTCGCCGCAGGGTTTGATGATC
LOC_Os01g40310
Target Sequence 
AGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGTGAACAGGTACGACGAGAAGTGGTCGAAGCAGTGGTT
CGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGA
GCACGGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTC
CTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGT
CTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGG
CCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCC
GACTGATCGTCGCCGCAGGGTTTGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53702.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis