Browse Element(s) Details


Os.9702.1.S1_a_at

Description gb:AK062064.1
DB_XREF= gi:32972082
TID=Os.9702.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0712E02.14 (P0712E02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D03, full insert sequence.
FL= gb:AK064970.1 gb:AK065984.1 gb:AK062064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4033011/11bZIP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9702.1.S1_a_at--169--2171Chr01:23098870..23098894 (25 bp)
ACACTTGCAAAGCTGGACACGTTCA
LOC_Os01g40330
Os.9702.1.S1_a_at--900--911Chr01:23098916..23098940 (25 bp)
AGGCTAGGTATCTGAACTCCGTGAG
LOC_Os01g40330
Os.9702.1.S1_a_at--980--1991Chr01:23098931..23098955 (25 bp)
ACTCCGTGAGGACTAGTCGAGCCAT
LOC_Os01g40330
Os.9702.1.S1_a_at--871--9371Chr01:23098947..23098971 (25 bp)
TCGAGCCATGACACTGAACAATCTT
LOC_Os01g40330
Os.9702.1.S1_a_at--1128--3051Chr01:23098966..23098990 (25 bp)
AATCTTCAGACGAGCCTTCCAAATG
LOC_Os01g40330
Os.9702.1.S1_a_at--363--3411Chr01:23098972..23098996 (25 bp)
CAGACGAGCCTTCCAAATGTGTTCC
LOC_Os01g40330
Os.9702.1.S1_a_at--1043--10371Chr01:23099011..23099035 (25 bp)
TTTTCCGGAGTATGCGTGCAGGCGT
LOC_Os01g40330
Os.9702.1.S1_a_at--316--5011Chr01:23099028..23099052 (25 bp)
GCAGGCGTTCGAAGGTATCAGTAGA
LOC_Os01g40330
Os.9702.1.S1_a_at--1119--10031Chr01:23099049..23099073 (25 bp)
TAGATGCAGTGAGATTGTCGCCAGC
LOC_Os01g40330
Os.9702.1.S1_a_at--1030--1691Chr01:23099071..23099095 (25 bp)
AGCCACTCGGGAGCAGTTTCACCTG
LOC_Os01g40330
Os.9702.1.S1_a_at--205--1211Chr01:23099085..23099109 (25 bp)
AGTTTCACCTGCCATTTCTTCGTGA
LOC_Os01g40330
Target Sequence 
ACACTTGCAAAGCTGGACACGTTCAAAAAGCAGGTTGAAGAGGAGAAGGCTAGGTATCTGAACTCCGTGAGGACTAGTCG
AGCCATGACACTGAACAATCTTCAGACGAGCCTTCCAAATGTGTTCCATGCTCTGATGGGGTTTTCCGGAGTATGCGTGC
AGGCGTTCGAAGGTATCAGTAGATGCAGTGAGATTGTCGCCAGCCACTCGGGAGCAGTTTCACCTGCCATTTCTTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9702.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis