Browse Element(s) Details


Os.21565.1.S1_at

Description gb:AK069501.1
DB_XREF= gi:32979525
TID=Os.21565.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21565 (NCBI UniGene Cluster)
UG_TITLE=MRNA for beta 1,3-glycosyltransferase-like protein I (b3gt1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020A13, full insert sequence.
FL= gb:AK069501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2971011/11beta 1,3-glycosyltransferase-like protein I, putative, expressed
LOC_Os01g403601/11amino acid transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29660Os.11945.1.S1_at11/118+18087202..18088908WRKY DNA binding domain containing protein, expressed
LOC_Os08g29680NANA8+18091813..18092070hypothetical protein
LOC_Os08g29690OsAffx.5954.5.S1_x_at5/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29690OsAffx.5954.4.S1_x_at3/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29700OsAffx.5954.3.S1_x_at3/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29700OsAffx.5954.1.S1_x_at1/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29710Os.21565.1.S1_at11/118+18110740..18116601beta 1,3-glycosyltransferase-like protein I, putative, expressed
LOC_Os08g29720Os.9525.1.S1_a_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29720Os.9525.3.S1_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21565.1.S1_at--765--4211Chr08:18114223..18114247 (25 bp)
CCGCCATGCTTCTGGTGAAATGTTT
LOC_Os08g29710
Os.21565.1.S1_at--991--2291Chr08:18114256..18114280 (25 bp)
AAAGGCTGTAGCTCAATTCATCTCT
LOC_Os08g29710
Os.21565.1.S1_at--589--9831Chr08:18114282..18114415 (25 bp)
TAAACAGGTCTGTTCTCCGGACATA
LOC_Os08g29710
Os.21565.1.S1_at--261--6731Chr08:18114402..18114426 (25 bp)
GTTCTCCGGACATATGCACATGATG
LOC_Os08g29710
Os.21565.1.S1_at--388--6431Chr08:18114439..18114463 (25 bp)
GATCATGGTTAATTGGTCTTGCTGT
LOC_Os08g29710
Os.21565.1.S1_at--769--2391Chr08:18114483..18114507 (25 bp)
AAACTATGTTGTTCATCCTGGCCCT
LOC_Os08g29710
Os.21565.1.S1_at--459--5272Chr08:18116264..18116288 (25 bp)
GAATGAAGCATACCATCTGCAGACA
LOC_Os08g29710
Os.21565.1.S1_at--576--5051Chr08:18116358..18116382 (25 bp)
GCAGCACTAGTTCAAACTGAGCCAT
LOC_Os08g29710
Os.21565.1.S1_at--1007--5851Chr08:18116376..18116400 (25 bp)
GAGCCATATATATCTTCTTTTTGCG
LOC_Os08g29710
Os.21565.1.S1_at--301--91Chr08:18116464..18116488 (25 bp)
ATTCCATCTGCAGATTGTATCTTGA
LOC_Os08g29710
Os.21565.1.S1_at--848--3352Chr08:18116513..18116537 (25 bp)
CACCCTTACCATTCTTTTACTGATA
LOC_Os08g29710
Target Sequence 
CCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGA
CATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAATGAAGCAAAACTATGT
TGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTNTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATT
ATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGT
TTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGA
AGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGT
ATCTTGATTTTGCCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis