Browse Element(s) Details


Os.8737.1.S1_at

Description gb:AK058827.1
DB_XREF= gi:32968845
TID=Os.8737.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H08, full insert sequence.
FL= gb:AK058827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2973011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29700OsAffx.5954.3.S1_x_at3/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29700OsAffx.5954.1.S1_x_at1/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29710Os.21565.1.S1_at11/118+18110740..18116601beta 1,3-glycosyltransferase-like protein I, putative, expressed
LOC_Os08g29720Os.9525.1.S1_a_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29720Os.9525.3.S1_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8737.1.S1_at--26--3711Chr08:18136112..18136136 (25 bp)
CTATGGGTGGACTTCCTGCTCAAAG
LOC_Os08g29730
Os.8737.1.S1_at--808--5391Chr08:18136160..18136184 (25 bp)
GAAGCATCCGAAACTGCAAGGCTGT
LOC_Os08g29730
Os.8737.1.S1_at--149--5371Chr08:18136190..18136214 (25 bp)
GAAGAGAACCAGACTGCCAGCACCA
LOC_Os08g29730
Os.8737.1.S1_at--794--2671Chr08:18136225..18136249 (25 bp)
AAGCGCGCAACCATCAGGGCATATC
LOC_Os08g29730
Os.8737.1.S1_at--276--7811Chr08:18136292..18136316 (25 bp)
GGTCGTCAAGACACCGAATTTGCAA
LOC_Os08g29730
Os.8737.1.S1_at--553--10571Chr08:18136361..18136385 (25 bp)
TTCTCAAGACCACCCCAAAGATGAT
LOC_Os08g29730
Os.8737.1.S1_at--927--2551Chr08:18136393..18136417 (25 bp)
AACTGTACAGTATCAGATGCCTTTT
LOC_Os08g29730
Os.8737.1.S1_at--1039--6352Chr08:18136408..18136432 (25 bp)
GATGCCTTTTTCTTCAAAGCGTGCA
LOC_Os08g29730
Os.8737.1.S1_at--77--3571Chr08:18136431..18136455 (25 bp)
CATCATGATGTAAGCTATTCGTTTC
LOC_Os08g29730
Os.8737.1.S1_at--927--9591Chr08:18136501..18136525 (25 bp)
TCATTTTTTGTTCCCCTTCATCTTC
LOC_Os08g29730
Os.8737.1.S1_at--258--1571Chr08:18136651..18136675 (25 bp)
AGCTAGAATCTGTTTGCACTTGTAT
LOC_Os08g29730
Target Sequence 
CTATGGGTGGACTTCCTGCTCAAAGAGACGGAANAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGA
AGAGAACCAGACTGCCAGCACCAGCAACGCATCAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCNCCTGNCCCTT
CCACAAGCCATCNCATGTTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCANTCACATCCTCAACATATACCTCCACA
CAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGC
ATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGT
TCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATAT
TGCCAGAGTATATGATTNTGCAATTGAAACGTTTTTGTACCCCTGTTNTGATATATACAAGCTAGAATCTGTTTGCACTT
GTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis