Browse Element(s) Details


Os.12400.2.S1_x_at

Description gb:AK105152.1
DB_XREF= gi:32990361
TID=Os.12400.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F02, full insert sequence.
FL= gb:AK105152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3002010/11expressed protein
LOC_Os08g297601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29999NANA8+18295883..18297205NA
LOC_Os08g30010NANA8+18299898..18305602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g30020Os.12400.4.S1_at11/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.2.S1_x_at10/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.1.S1_x_at1/118+18319856..18325328expressed protein
LOC_Os08g30030Os.8747.3.S1_x_at4/118+18328310..18328636hypothetical protein
LOC_Os08g30030Os.33750.2.S1_x_at2/118+18328310..18328636hypothetical protein
LOC_Os08g30040OsAffx.26070.3.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040OsAffx.26070.2.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040Os.49801.1.S1_s_at2/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12400.2.S1_x_at--655--9211Chr08:18319990..18320014 (25 bp)
TCCACAGTTTCCATCGAACGCCAGG
LOC_Os08g30020
Os.12400.2.S1_x_at--942--1131Chr08:18320343..18320367 (25 bp)
AGTCGTCAACTTTCTGTGGAGCGGC
LOC_Os08g30020
Os.12400.2.S1_x_at--698--7511Chr08:18320358..18320382 (25 bp)
GTGGAGCGGCGAGGCCTCTTATCAC
LOC_Os08g30020
Os.12400.2.S1_x_at--756--391NONE
ATCACCACGTGTGGCCGCGTTTGGA
NONE
Os.12400.2.S1_x_at--490--7491Chr08:18321381..18321405 (25 bp)
GTGGGATTTTCGTGCCGATGCTGAC
LOC_Os08g30020
Os.12400.2.S1_x_at--158--4512Chr08:18321394..18321418 (25 bp)
GCCGATGCTGACCTTGATCATTGGT
LOC_Os08g30020
Os.12400.2.S1_x_at--305--3631Chr08:18321406..18321430 (25 bp)
CTTGATCATTGGTTTCGACGCGAAA
LOC_Os08g30020
Os.12400.2.S1_x_at--231--5811Chr08:18321422..18321446 (25 bp)
GACGCGAAATCATCAACGGCGATAT
LOC_Os08g30020
Os.12400.2.S1_x_at--564--3151Chr08:18321540..18321561 (22 bp)
AATTCATTGTCAGCACTCAGCAGTG
LOC_Os08g30020
Os.12400.2.S1_x_at--335--5031Chr08:18321556..18321580 (25 bp)
GCAGTGCAATCAATATCATCCTTAT
LOC_Os08g30020
Os.12400.2.S1_x_at--654--11Chr08:18321579..18321603 (25 bp)
ATTGGTACCATTGAACCGTGCCTTT
LOC_Os08g30020
Target Sequence 
TCCACAGTTTCCATCGAACGCCAGGGGGGGGCTAAATTAAAGAAGGATACAAAATGGGGAGGAGATGGCACGCCCTCGCC
GCCGTCGGCGTGGCCGCCTGCGCGGCCGCCGCAGTCGCCGCCGGCGACAGGGGGTTCACGTTCGCCGACGCGGTGGCGGC
GCCGGAGGAGGTGGGCTACATGAGGAAAGTCGTCAACTTTCTGTGGAGCGGCGAGGCCTCTTATCACCACGTGTGGCCGC
GTTTGGAAGTGTAGGAGGAGTAGGTGGCGGTGGGATTTTCGTGCCGATGCTGACCTTGATCATTGGTTTCGACGCGAAAT
CATCAACGGCGATATCAAAATTCATTGTCAGCACTCAGCAGTGCAATCAATATCATCCTTATTGGTACCATTGAACCGTG
CCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12400.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis