Browse Element(s) Details


Os.33750.2.S1_x_at

Description gb:NM_191494.1
DB_XREF= gi:34910071
GEN=B1100D10.11
TID=Os.33750.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.17 (B1100D10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1100D10.11 (B1100D10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g300302/11hypothetical protein
LOC_Os08g052802/11Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os10g104001/11hypothetical protein
LOC_Os12g033801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30010NANA8+18299898..18305602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g30020Os.12400.4.S1_at11/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.2.S1_x_at10/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.1.S1_x_at1/118+18319856..18325328expressed protein
LOC_Os08g30030Os.8747.3.S1_x_at4/118+18328310..18328636hypothetical protein
LOC_Os08g30030Os.33750.2.S1_x_at2/118+18328310..18328636hypothetical protein
LOC_Os08g30040OsAffx.26070.3.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040OsAffx.26070.2.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040Os.49801.1.S1_s_at2/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008152biological_processmetabolism
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33750.2.S1_x_at--757--8398Chr08:18328420..18328444 (25 bp)
GGCCCTCGGTACCTTGAAGCCTTCA
LOC_Os08g30030
Os.33750.2.S1_x_at--448--712Chr01:33466943..33466967 (25 bp)
ATGATGACAATGGACCTTCACAAGC
NONE
Os.33750.2.S1_x_at--807--6312Chr01:33466941..33466965 (25 bp)
GATGACAATGGACCTTCACAAGCTG
NONE
Os.33750.2.S1_x_at--93--8972Chr01:33466939..33466963 (25 bp)
TGACAATGGACCTTCACAAGCTGTT
NONE
Os.33750.2.S1_x_at--446--5612Chr01:33466938..33466962 (25 bp)
GACAATGGACCTTCACAAGCTGTTC
NONE
Os.33750.2.S1_x_at--372--2232Chr01:33466937..33466961 (25 bp)
ACAATGGACCTTCACAAGCTGTTCT
NONE
Os.33750.2.S1_x_at--837--2952Chr01:33466935..33466959 (25 bp)
AATGGACCTTCACAAGCTGTTCTTC
NONE
Os.33750.2.S1_x_at--109--852Chr01:33466934..33466958 (25 bp)
ATGGACCTTCACAAGCTGTTCTTCG
NONE
Os.33750.2.S1_x_at--1083--8532Chr01:33466933..33466957 (25 bp)
TGGACCTTCACAAGCTGTTCTTCGG
NONE
Os.33750.2.S1_x_at--739--8072Chr01:33466932..33466956 (25 bp)
GGACCTTCACAAGCTGTTCTTCGGT
NONE
Os.33750.2.S1_x_at--893--6738Chr12:1313682..1313769 (25 bp)
GTTCTTCGGTCCTTTGATTGATGAT
LOC_Os12g03380
Target Sequence 
GGCCCTCGGTACCTTGAAGCCTTCACGAATCGTTCTTCGGCTCTTCATTGATTCGGAGATGTTGATGATGATGACAATGG
ACCTTCACAAGCTGTTCTTCGGTCCTTTGATTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33750.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis