Browse Element(s) Details


Os.24594.1.A1_s_at

Description gb:CA762153
DB_XREF= gi:25806192
DB_XREF=BR060006B20E09.ab1
CLONE=BR060006B20E09.ab1
TID=Os.24594.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24594 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180151.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3007011/11expressed protein
LOC_Os07g345891/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30020Os.12400.4.S1_at11/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.2.S1_x_at10/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.1.S1_x_at1/118+18319856..18325328expressed protein
LOC_Os08g30030Os.8747.3.S1_x_at4/118+18328310..18328636hypothetical protein
LOC_Os08g30030Os.33750.2.S1_x_at2/118+18328310..18328636hypothetical protein
LOC_Os08g30040OsAffx.26070.3.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040OsAffx.26070.2.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040Os.49801.1.S1_s_at2/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein
LOC_Os08g30080Os.52607.1.S1_at11/118+18358892..18360418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g30090OsAffx.29427.1.S1_at11/118+18364127..18364955hypothetical protein
LOC_Os08g30100NANA8+18376163..18377287oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24594.1.A1_s_at--344--10231Chr08:18348673..18348697 (25 bp)
TTTGCGAGTTTTGTGCTACCGAAAT
LOC_Os08g30070
Os.24594.1.A1_s_at--815--8351Chr08:18348643..18348667 (25 bp)
GGCGGCTACAAAGTTCCTCAAGAAA
LOC_Os08g30070
Os.24594.1.A1_s_at--484--8191Chr08:18348577..18348601 (25 bp)
GGAAGCTTTGATCCTTTCATGTATA
LOC_Os08g30070
Os.24594.1.A1_s_at--629--5311Chr08:18348494..18348518 (25 bp)
GAAGGATACCAACAGCAACATGCTC
LOC_Os08g30070
Os.24594.1.A1_s_at--657--591Chr08:18348475..18348499 (25 bp)
ATGCTCCGGGAGAGTTGTGCCTTCA
LOC_Os08g30070
Os.24594.1.A1_s_at--1146--8691Chr08:18348460..18348484 (25 bp)
TGTGCCTTCAACATGTGGCAGGCTC
LOC_Os08g30070
Os.24594.1.A1_s_at--674--1131Chr08:18348397..18348421 (25 bp)
AGTCCACGCTGGTCTAAAGATGCAA
LOC_Os08g30070
Os.24594.1.A1_s_at--567--7391Chr08:18348360..18348384 (25 bp)
GTGAGTTTTACTGCTGGATCCGATG
LOC_Os08g30070
Os.24594.1.A1_s_at--1015--4052Chr08:18348340..18348364 (25 bp)
CGATGATTCCTGTTTCGTCTGGAGA
LOC_Os08g30070
Os.24594.1.A1_s_at--158--7491Chr08:18348300..18348324 (25 bp)
GTGGGCTTGTTTTTCTGTCGCTCTA
LOC_Os08g30070
Os.24594.1.A1_s_at--753--6111Chr08:18348186..18348210 (25 bp)
GAGTGCTTACACTTGTTTTGTACAA
LOC_Os08g30070
Target Sequence 
TTTGCGAGTTTTGTGCTACCGAAATGATGAGGCGGCTACAAAGTTCCTCAAGAAAGCATACAATCTACCAAAGAAACTTT
GATTTGTCAGCAGTTTGGAAGCTTTGATCCTTTCATGTATATATTTGGTGCTTGCAAAAGATATGTTGGATTGAGTAGGG
TTATGATGCTTATNCATTTGAAGGATACCAACAGCAACATGCTCCGGGAGAGTTGTGCCTTCAACATGTGGCAGGCTCCA
TGGATGCAGACAGAGGATCTCATTTTTGAAGTGTCAAGTCCACGCTGGTCTAAAGATGCAAAGGTTACGACTTGTGAGTT
TTACTGCTGGATCCGATGATTCCTGTTTCGTCTGGAGAGTTGTTTGTGCACGCGTGGGCTTGTTTTTCTGTCGCTCTATT
CTTTTTAGAATTGAAGGGTTTTTTTTTAAAAGTACACACTCAAATCTGTGAATAAGCTATAGACACGCTTAAATTCTACA
CATACACGAGTGCTTACACTTGTTTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24594.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis