Browse Element(s) Details


Os.52607.1.S1_at

Description gb:AK068286.1
DB_XREF= gi:32978304
TID=Os.52607.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149K15, full insert sequence.
FL= gb:AK068286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3008011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein
LOC_Os08g30080Os.52607.1.S1_at11/118+18358892..18360418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g30090OsAffx.29427.1.S1_at11/118+18364127..18364955hypothetical protein
LOC_Os08g30100NANA8+18376163..18377287oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os08g30110OsAffx.22387.1.S1_at1/118+18378823..18381832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30120NANA8+18383764..18387357transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52607.1.S1_at--444--9912Chr06:24895140..24895159 (20 bp)
TACTCGGCGTCGTTGACGAGGCCGA
NONE
Os.52607.1.S1_at--458--1931Chr08:18359353..18359377 (25 bp)
ACGGCCCGATCGTGGATTCCGGCGA
LOC_Os08g30080
Os.52607.1.S1_at--177--1511Chr08:18359294..18359318 (25 bp)
AGCACGACGCCGAGGGATTTCCTGG
LOC_Os08g30080
Os.52607.1.S1_at--767--6131Chr08:18359283..18359307 (25 bp)
GAGGGATTTCCTGGCGTACTTCAAC
LOC_Os08g30080
Os.52607.1.S1_at--260--4951Chr08:18359226..18359250 (25 bp)
GCATTTCAGGATTCCGGAGGCGGCT
LOC_Os08g30080
Os.52607.1.S1_at--10--4991Chr08:18359153..18359177 (25 bp)
GCATCCATTCCACGGTAGCAATCGT
LOC_Os08g30080
Os.52607.1.S1_at--441--7851Chr08:18359099..18359123 (25 bp)
GGTAGCTAGTGTGTGTTATCCGGAA
LOC_Os08g30080
Os.52607.1.S1_at--312--10251Chr08:18359084..18359108 (25 bp)
TTATCCGGAAGGGTCGTAGCAGTGT
LOC_Os08g30080
Os.52607.1.S1_at--467--1531Chr08:18359067..18359091 (25 bp)
AGCAGTGTACGCGTGGCGATTTGTT
LOC_Os08g30080
Os.52607.1.S1_at--977--6611Chr08:18359045..18359069 (25 bp)
GTTGGTTGCCAGTCAGGTTAGGCCA
LOC_Os08g30080
Os.52607.1.S1_at--180--10111Chr08:18359027..18359051 (25 bp)
TAGGCCAGGTGTTACGTCACTGATT
LOC_Os08g30080
Target Sequence 
TACTCGGCGTCGTTGACGAGGCCGAGGTCGTACGGCCCGATCGTGGATTCCGGCGAAGGCGGCGCGCGGCGGGCGGCGGC
GGTGTACAGGAGCACGACGCCGAGGGATTTCCTGGCGTACTTCAACGGCAAGGGGCTNGACGGGCGGTCGGCGCTGGAGC
ATTTCAGGATTCCGGAGGCGGCTGCGGCTTCTTCCGCCGTCGACGTCGTCTCCTCCTCCACCACCGCCGCCGCATCCATT
CCACGGTAGCAATCGTGTCGGTGCGTGTTGAGGTTGTTGCTTGCTGGTAGCTAGTGTGTGTTATCCGGAAGGGTCGTAGC
AGTGTACGCGTGGCGATTTGTTGGTTGCCAGTCAGGTTAGGCCAGGTGTTACGTCACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis