Browse Element(s) Details


OsAffx.29427.1.S1_at

Description tigr:9636.m02999
TID=OsAffx.29427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3009011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein
LOC_Os08g30080Os.52607.1.S1_at11/118+18358892..18360418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g30090OsAffx.29427.1.S1_at11/118+18364127..18364955hypothetical protein
LOC_Os08g30100NANA8+18376163..18377287oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os08g30110OsAffx.22387.1.S1_at1/118+18378823..18381832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30120NANA8+18383764..18387357transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29427.1.S1_at--295--5451Chr08:18364895..18364919 (25 bp)
GAACGTAGCCAGCTCAGCGCTTGGT
LOC_Os08g30090
OsAffx.29427.1.S1_at--585--1651Chr08:18364880..18364904 (25 bp)
AGCGCTTGGTCAACCGGCGCTGAAT
LOC_Os08g30090
OsAffx.29427.1.S1_at--1055--5711Chr08:18364830..18364854 (25 bp)
GACTCGGCGTGCTAACATGTCAAAG
LOC_Os08g30090
OsAffx.29427.1.S1_at--593--5671Chr08:18364792..18364816 (25 bp)
GACTCGGCGTTGAGGTGGCTAATCT
LOC_Os08g30090
OsAffx.29427.1.S1_at--441--8491Chr08:18364777..18364801 (25 bp)
TGGCTAATCTCTGCGCCATTCGATA
LOC_Os08g30090
OsAffx.29427.1.S1_at--141--4891Chr08:18364743..18364767 (25 bp)
GCTTCGAGACATTAAGGCCTACCCG
LOC_Os08g30090
OsAffx.29427.1.S1_at--230--1471Chr08:18364707..18364731 (25 bp)
AGAAGGAGCTCTCTCAATTCTCTCT
LOC_Os08g30090
OsAffx.29427.1.S1_at--46--10291Chr08:18364681..18364705 (25 bp)
TTTCCCGCTCCACAAAAACTATGAT
LOC_Os08g30090
OsAffx.29427.1.S1_at--1102--7051Chr08:18364251..18364272 (22 bp)
GTAAGCCCGGGAATGCTGGCAAGTA
LOC_Os08g30090
OsAffx.29427.1.S1_at--738--5171Chr08:18364233..18364257 (25 bp)
GCAAGTACGTCGTGCTCGTGAACAT
LOC_Os08g30090
OsAffx.29427.1.S1_at--143--7371Chr08:18364216..18364240 (25 bp)
GTGAACATGTACGTCGCGCGCGAGA
LOC_Os08g30090
Target Sequence 
GAACGTAGCCAGCTCAGCGCTTGGTCAACCGGCGCTGAATGGCATGCCACCGTGGATGGCAGGCTGACTCGGCGTGCTAA
CATGTCAAAGTTCAGCACCACCCGACTCGGCGTTGAGGTGGCTAATCTCTGCGCCATTCGATATGGCACAGAGCTTCGAG
ACATTAAGGCCTACCCGCCCCGGCCGAGAGAAGGAGCTCTCTCAATTCTCTCTCTTTCCCGCTCCACAAAAACTATGATG
GCGACGGCGGCGTTCCTCTCTGACCCTAATCCGCCTCTAACCCATGGGGAATCAATGGGATTTGGAGGGGATTTCATGTG
GAGGTTGTGGAGTAAGCCCGGGAATGCTGGCAAGTACGTCGTGCTCGTGAACATGTACGTCGCGCGCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis