Browse Element(s) Details


Os.10450.1.S1_at

Description gb:AB117988.1
DB_XREF= gi:42733463
GEN=bip131
TID=Os.10450.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10450 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bip131 mRNA for BRI1-KD interacting protein 131, complete cds.
PROD=BRI1-KD interacting protein 131
FL= gb:AK067513.1 gb:AB117988.1 gb:AK099893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3006011/11proton pump interactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30020Os.12400.4.S1_at11/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.2.S1_x_at10/118+18319856..18325328expressed protein
LOC_Os08g30020Os.12400.1.S1_x_at1/118+18319856..18325328expressed protein
LOC_Os08g30030Os.8747.3.S1_x_at4/118+18328310..18328636hypothetical protein
LOC_Os08g30030Os.33750.2.S1_x_at2/118+18328310..18328636hypothetical protein
LOC_Os08g30040OsAffx.26070.3.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040OsAffx.26070.2.S1_x_at11/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30040Os.49801.1.S1_s_at2/118+18329699..18332722transposon protein, putative, unclassified
LOC_Os08g30050Os.54774.1.S1_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.54774.1.S1_x_at2/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050Os.19099.1.S1_x_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30050OsAffx.25367.1.S1_at1/118+18335512..18340294retrotransposon, putative, centromere-specific
LOC_Os08g30060Os.10450.1.S1_at11/118+18341325..18347944proton pump interactor, putative, expressed
LOC_Os08g30070Os.24594.1.A1_s_at11/118+18348098..18353766expressed protein
LOC_Os08g30080Os.52607.1.S1_at11/118+18358892..18360418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g30090OsAffx.29427.1.S1_at11/118+18364127..18364955hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010155biological_processregulation of proton transport
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10450.1.S1_at--1057--5051Chr08:18347355..18347379 (25 bp)
GCAGCTGAATCCGATGCCAAGTCTG
LOC_Os08g30060
Os.10450.1.S1_at--691--4411Chr08:18347405..18347429 (25 bp)
GCCAGCAGCTCCTGTCACAATTAAA
LOC_Os08g30060
Os.10450.1.S1_at--583--5591Chr08:18347501..18347525 (25 bp)
GAAATCTCAGGCTTTCTGGTCATGG
LOC_Os08g30060
Os.10450.1.S1_at--206--7711Chr08:18347525..18347549 (25 bp)
GGGTGCACCCATGGCAGCATTGGCA
LOC_Os08g30060
Os.10450.1.S1_at--409--10691Chr08:18347602..18347626 (25 bp)
TTCCAGCTAGCACCAGCAACTGATG
LOC_Os08g30060
Os.10450.1.S1_at--844--5491Chr08:18347626..18347650 (25 bp)
GAACATGTCACAAGTGCTCTGGCTG
LOC_Os08g30060
Os.10450.1.S1_at--428--4731Chr08:18347647..18347671 (25 bp)
GCTGTGATACAAGTGCCTGCCTGAT
LOC_Os08g30060
Os.10450.1.S1_at--927--1131Chr08:18347658..18347682 (25 bp)
AGTGCCTGCCTGATCAATTTTTTGC
LOC_Os08g30060
Os.10450.1.S1_at--765--3851Chr08:18347706..18347730 (25 bp)
CTGAATGAGGATCCCCTACATGGTT
LOC_Os08g30060
Os.10450.1.S1_at--473--2111Chr08:18347723..18347747 (25 bp)
ACATGGTTCCTGTTCTTGTAGTTCC
LOC_Os08g30060
Os.10450.1.S1_at--158--5291Chr08:18347799..18347823 (25 bp)
GAATGGTTTTCGCTCTACTATACTG
LOC_Os08g30060
Target Sequence 
GCAGCTGAATCCGATGCCAAGTCTGATGAAGCCGAAGCCCAGGAGGAAGAGCCAGCAGCTCCTGTCACAATTAAAAAGAA
TGCCCGGCACAGAAGTACGGTGACGAAAACGAAGACCCCTCTTCCGAAGGCGGTCCTGAAGAGGAAGAAATCTCAGGCTT
TCTGGTCATGGGGTGCACCCATGGCAGCATTGGCAGCTGCGCTCGTGGCCCTTCTTGGAGCCCTGGTCTACTACCAGTAC
TACTACCTTCCAGCTAGCACCAGCAACTGATGAACATGTCACAAGTGCTCTGGCTGTGATACAAGTGCCTGCCTGATCAA
TTTTTTGCATTTGACTAGAGGCATATGATCTCTGAATGAGGATCCCCTACATGGTTCCTGTTCTTGTAGTTCCTTTACTA
AGTGAATTCTAGAGAAGGATTATACCGTTATAATTTTGGCTGGAGAATGGTTTTCGCTCTACTATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis