Browse Element(s) Details


Os.8747.3.S1_x_at

Description gb:NM_195195.1
DB_XREF= gi:37531749
TID=Os.8747.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8747 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNAb0022I16.9), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1040011/11hypothetical protein
LOC_Os08g052804/11Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os08g300304/11hypothetical protein
LOC_Os06g027603/11hypothetical protein
LOC_Os12g033802/11expressed protein
LOC_Os04g022642/11retrotransposon protein, putative, unclassified
LOC_Os08g130102/11hypothetical protein
LOC_Os08g079402/11NB-ARC domain containing protein
LOC_Os07g251301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g031901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g143401/11hypothetical protein
LOC_Os02g183401/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g171401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g233601/11Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os05g300901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006952biological_processdefense response
GO:0008152biological_processmetabolism
GO:0009626biological_processhypersensitive response
GO:0016020cellular_componentmembrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005351molecular_functionsugar porter activity
GO:0005515molecular_functionprotein binding
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8747.3.S1_x_at--1037--94316Chr12:18597718..18597742 (25 bp)
TCGGAGCCTTCACAAACTGTTCTTC
NONE
Os.8747.3.S1_x_at--575--10537Chr08:18328414..18328438 (25 bp)
TTCTTCGGCCCTCGGTACCTTGAAG
LOC_Os08g30030
Os.8747.3.S1_x_at--293--10751Chr10:5481982..5482006 (25 bp)
TTGAAGCCTTCACGACTCGTTCTTC
LOC_Os10g10400
Os.8747.3.S1_x_at--812--6739Chr12:18597774..18597798 (25 bp)
GTTCTTCGGCTCTTCATTGATTCAG
NONE
Os.8747.3.S1_x_at--246--9593Chr12:18597787..18597811 (25 bp)
TCATTGATTCAGAGACGTTGACGAT
NONE
Os.8747.3.S1_x_at--831--1872Chr12:18597801..18597825 (25 bp)
ACGTTGACGATGATGGAAGGCCCTT
NONE
Os.8747.3.S1_x_at--690--7911Chr12:18597813..18597837 (25 bp)
ATGGAAGGCCCTTCACAAACTGTTC
NONE
Os.8747.3.S1_x_at--891--6734Chr08:18328511..18328535 (25 bp)
GTTCTTCGGACCTTCATAGATCTGA
LOC_Os08g30030
Os.8747.3.S1_x_at--494--291Chr10:5481889..5481913 (25 bp)
ATAGATCTGATAAAGGACCTTCACA
LOC_Os10g10400
Os.8747.3.S1_x_at--721--3291Chr10:5481866..5481890 (25 bp)
CAAATTGTTCTTCAGTCCTTCATTG
LOC_Os10g10400
Os.8747.3.S1_x_at--713--73911Chr08:11821665..11821769 (24 bp)
GTGATGATGATGTCAACTCCGATGG
LOC_Os08g19750
Target Sequence 
TCGGAGCCTTCACAAACTGTTCTTCGGCCCTCGGTACCTTGAAGCCTTCACGACTCGTTCTTCGGCTCTTCATTGATTCA
GAGACGTTGACGATGATGGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCATAGATCTGATAAAGGACCTTCACAAATT
GTTCTTCAGTCCTTCATTGAGTGATGATGATGTCAACTCCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8747.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis