Browse Element(s) Details


OsAffx.30377.1.S1_at

Description gb:NM_195196.1
DB_XREF= gi:37531751
TID=OsAffx.30377.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1041011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30377.1.S1_at--1103--6711Chr10:5484129..5484153 (25 bp)
GTTCTCCATCATCAAACTGCTAAGC
LOC_Os10g10410
OsAffx.30377.1.S1_at--1122--9071Chr10:5484112..5484136 (25 bp)
TGCTAAGCAGCATGCGGACGCGCTA
LOC_Os10g10410
OsAffx.30377.1.S1_at--423--8171Chr10:5484082..5484106 (25 bp)
GGAACATGCGCGTCATCAGGTCTGA
LOC_Os10g10410
OsAffx.30377.1.S1_at--113--3151Chr10:5484007..5484031 (25 bp)
AATTCTGGCACCTCGACAAGAGCAG
LOC_Os10g10410
OsAffx.30377.1.S1_at--1111--8931Chr10:5483898..5483922 (25 bp)
TGACGACGTCGCGAGGATCATGGAC
LOC_Os10g10410
OsAffx.30377.1.S1_at--933--3631Chr10:5483856..5483880 (25 bp)
CTTCCTCAAACACTATGGCTCTGAA
LOC_Os10g10410
OsAffx.30377.1.S1_at--644--3771Chr10:5483838..5483862 (25 bp)
CTCTGAATGGGTGTTTGCTCTCGAC
LOC_Os10g10410
OsAffx.30377.1.S1_at--711--5751Chr10:5483816..5483840 (25 bp)
GACGTTCAGGCCATGGTGTTGTTCA
LOC_Os10g10410
OsAffx.30377.1.S1_at--844--811Chr10:5483804..5483828 (25 bp)
ATGGTGTTGTTCAGGCTGCCTCACA
LOC_Os10g10410
OsAffx.30377.1.S1_at--900--9691Chr10:5483784..5483808 (25 bp)
TCACAGGAGGTACTACTTTGGGCCG
LOC_Os10g10410
OsAffx.30377.1.S1_at--1011--3751Chr10:5483758..5483782 (25 bp)
CTCTTCCCTACAGGCTGGTGCTGAA
LOC_Os10g10410
Target Sequence 
GTTCTCCATCATCAAACTGCTAAGCAGCATGCGGACGCGCTACGACGGGAACATGCGCGTCATCAGGTCTGACGACGGCG
AGCTCCGCGTCGTGGCGTTCGCGGCCGCAGCGGCGCGGCTCGAATTCTGGCACCTCGACAAGAGCAGGAGCAGCAGGGGG
CGGTGGGTGCGGGAGTCGCGGGTGGAGCTGGCGCACGTCGACGGTGTGATGGAGCTCTGTGTGGACGCCGATGACGACGT
CGCGAGGATCATGGACGCCGGCGAGGGCTTCGTCTTCCTCAAACACTATGGCTCTGAATGGGTGTTTGCTCTCGACGTTC
AGGCCATGGTGTTGTTCAGGCTGCCTCACAGGAGGTACTACTTTGGGCCGGCTCTTCCCTACAGGCTGGTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis