Browse Element(s) Details


Os.5604.1.S1_a_at

Description gb:AK099711.1
DB_XREF= gi:32984920
TID=Os.5604.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dimethyladenosine transferse (OSJNAb0022I16.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081J12, full insert sequence.
FL= gb:AK099711.1 gb:AK072957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1043411/11dimethyladenosine transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460Os.27691.1.S1_x_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460OsAffx.19532.1.S1_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10480Os.46714.1.S1_at11/1110+5525792..5533426expressed protein
LOC_Os10g10480Os.16112.1.S1_s_at1/1110+5525792..5533426expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000154biological_processrRNA modification
GO:0009409biological_processresponse to cold
GO:0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0008649molecular_functionrRNA methyltransferase activity
GO:0016422molecular_functionmRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5604.1.S1_a_at--1032--10831Chr10:5501887..5501911 (25 bp)
TTGGGTGCCATCTTTAAGCAGAAGC
LOC_Os10g10434
Os.5604.1.S1_a_at--610--2751Chr10:5501941..5501965 (25 bp)
AAGACAATGCAGTCTCTACAGCTCA
LOC_Os10g10434
Os.5604.1.S1_a_at--675--3731Chr10:5501956..5501980 (25 bp)
CTACAGCTCACCTCAGATGCAGAAA
LOC_Os10g10434
Os.5604.1.S1_a_at--597--2791Chr10:5501992..5502016 (25 bp)
AAGATGTCACCAGATGATGTTGCAT
LOC_Os10g10434
Os.5604.1.S1_a_at--589--6671Chr10:5502010..5502034 (25 bp)
GTTGCATTGCTATCAAGTATGGTCG
LOC_Os10g10434
Os.5604.1.S1_a_at--517--2111Chr10:5502038..5502062 (25 bp)
ACATGAACATGGAAAGCAGCTACGA
LOC_Os10g10434
Os.5604.1.S1_a_at--558--1191Chr10:5502108..5502132 (25 bp)
AGTAGAGAGCCGTGCATGTTTCAAA
LOC_Os10g10434
Os.5604.1.S1_a_at--679--4971Chr10:5502181..5502205 (25 bp)
GCATCGAAGCTCAGCCAGGTTGACT
LOC_Os10g10434
Os.5604.1.S1_a_at--1043--3471Chr10:5502196..5502220 (25 bp)
CAGGTTGACTTCTTGTACCTCCTGT
LOC_Os10g10434
Os.5604.1.S1_a_at--706--4271Chr10:5502216..5502240 (25 bp)
CCTGTCGCTCTTCAACAAAGCTGGT
LOC_Os10g10434
Os.5604.1.S1_a_at--308--3291Chr10:5502231..5502255 (25 bp)
CAAAGCTGGTATACATTTTTCCTGA
LOC_Os10g10434
Target Sequence 
TTGGGTGCCATCTTTAAGCAGAAGCGTGTCNTTGAATTGTTAGAGAAGAACTACAAGACAATGCAGTCTCTACAGCTCAC
CTCAGATGCAGAAAAAGGTGAGGAGAAGATGTCACCAGATGATGTTGCATTGCTATCAAGTATGGTCGATGACATGAACA
TGGAAAGCAGCTACGAGAATGATGATGATGATGAGATGGAAATGGATGATGCCGATATGGTAGTAGAGAGCCGTGCATGT
TTCAAAGAAAAGATTATGGGGATATTACAGCAAGGAGATTTTGCAGAGAAGAGAGCATCGAAGCTCAGCCAGGTTGACTT
CTTGTACCTCCTGTCGCTCTTCAACAAAGCTGGTATACATTTTTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5604.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis