Browse Element(s) Details


Os.46714.1.S1_at

Description gb:NM_195202.1
DB_XREF= gi:37531763
TID=Os.46714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0022I16.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1048011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460Os.27691.1.S1_x_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460OsAffx.19532.1.S1_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10480Os.46714.1.S1_at11/1110+5525792..5533426expressed protein
LOC_Os10g10480Os.16112.1.S1_s_at1/1110+5525792..5533426expressed protein
LOC_Os10g10490OsAffx.8414.1.S1_at11/1110+5537020..5538433retrotransposon protein, putative, unclassified
LOC_Os10g10500Os.28056.1.S1_at11/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10500Os.49542.1.S1_at1/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46714.1.S1_at--882--851Chr10:5532885..5532909 (25 bp)
ATGGCATCATCGATACCGTCTTGTA
LOC_Os10g10480
Os.46714.1.S1_at--204--7911Chr10:5532957..5532981 (25 bp)
GGTTCGCCGACAAGGATGATCGCTC
LOC_Os10g10480
Os.46714.1.S1_at--577--9771Chr10:5533020..5533044 (25 bp)
TAATGTACCTCGTCGTGAAGCGTGA
LOC_Os10g10480
Os.46714.1.S1_at--445--4931Chr10:5533066..5533090 (25 bp)
GCATTTTCGGCTTGGTAAGGCACGC
LOC_Os10g10480
Os.46714.1.S1_at--1152--5911Chr10:5533113..5533137 (25 bp)
GAGCTTCCACCGTCCATGATGAGAA
LOC_Os10g10480
Os.46714.1.S1_at--496--5631Chr10:5533138..5533162 (25 bp)
GACACTCTTGCGGTATGTGCGGCAG
LOC_Os10g10480
Os.46714.1.S1_at--18--7771Chr10:5533171..5533195 (25 bp)
GGTGACTGAGCCATGCTTTAGTCGT
LOC_Os10g10480
Os.46714.1.S1_at--48--10071Chr10:5533189..5533213 (25 bp)
TAGTCGTGGCCGTGTGATCACCGAT
LOC_Os10g10480
Os.46714.1.S1_at--997--9671Chr10:5533206..5533230 (25 bp)
TCACCGATCACCTTCTCAAGATAAG
LOC_Os10g10480
Os.46714.1.S1_at--499--1291Chr10:5533275..5533299 (25 bp)
AGATGCTGTGCTACCTTGGACCAAA
LOC_Os10g10480
Os.46714.1.S1_at--758--8471Chr10:5533339..5533363 (25 bp)
TGGCGAGTTCGTCACACATGTCAGG
LOC_Os10g10480
Target Sequence 
ATGGCATCATCGATACCGTCTTGTATTTTCCAATGACCGTCATTGTTTGGCACATCGCGACGGAGATGTGCTGGTTCGCC
GACAAGGATGATCGCTCCCCGTGCAGGGTTCCGAGCATGGAGCTGTCGAGATATGTAATGTACCTCGTCGTGAAGCGTGA
CGTGATGAGTGGCACCAATGGGCATTTTCGGCTTGGTAAGGCACGCCGCCTGCTGAAGCGCATCATTCGAGCTTCCACCG
TCCATGATGAGAAGACACTCTTGCGGTATGTGCGGCAGTCACCCGGGGTGACTGAGCCATGCTTTAGTCGTGGCCGTGTG
ATCACCGATCACCTTCTCAAGATAAGCAACGGAGCTCAGCGTTGGGAGCTCATCTCCATGGTGTGGATTGAGATGCTGTG
CTACCTTGGACCAAACTGTGGGGCTCAGTTCCATGCCAAGCATCTCAGCACTGGTGGCGAGTTCGTCACACATGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis