Browse Element(s) Details


Os.8747.3.S1_at

Description gb:NM_195195.1
DB_XREF= gi:37531749
TID=Os.8747.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8747 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNAb0022I16.9), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1040010/11hypothetical protein
LOC_Os06g027602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8747.3.S1_at--245--9593Chr12:18597787..18597811 (25 bp)
TCATTGATTCAGAGACGTTGACGAT
NONE
Os.8747.3.S1_at--483--53Chr12:18597789..18597813 (25 bp)
ATTGATTCAGAGACGTTGACGATGA
NONE
Os.8747.3.S1_at--328--1392Chr12:18597799..18597823 (25 bp)
AGACGTTGACGATGATGGAAGGCCC
NONE
Os.8747.3.S1_at--1149--5752Chr12:18597800..18597824 (25 bp)
GACGTTGACGATGATGGAAGGCCCT
NONE
Os.8747.3.S1_at--832--1872Chr12:18597801..18597825 (25 bp)
ACGTTGACGATGATGGAAGGCCCTT
NONE
Os.8747.3.S1_at--891--4012Chr12:18597802..18597826 (25 bp)
CGTTGACGATGATGGAAGGCCCTTC
NONE
Os.8747.3.S1_at--451--3571Chr10:5481890..5481914 (25 bp)
CATAGATCTGATAAAGGACCTTCAC
LOC_Os10g10400
Os.8747.3.S1_at--495--291Chr10:5481889..5481913 (25 bp)
ATAGATCTGATAAAGGACCTTCACA
LOC_Os10g10400
Os.8747.3.S1_at--708--1231Chr10:5481887..5481911 (25 bp)
AGATCTGATAAAGGACCTTCACAAA
LOC_Os10g10400
Os.8747.3.S1_at--584--5351Chr10:5481482..5481501 (20 bp)
GAAGATGGACAGGAGATGGTTTATT
LOC_Os10g10400
Os.8747.3.S1_at--96--851NONE
ATGGACAGGAGATGGTTTATTGTCT
NONE
Target Sequence 
TCATTGATTCAGAGACGTTGACGATGATGGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCATAGATCTGATAAAGGAC
CTTCACAAATTGTTCTTCAGTCCTTCATTGAGTGATGATGATGTCAACTCCGATGGGGAGATGAGAGAAGTAGCTGATGA
AGATGGACAGGAGATGGTTTATTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8747.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis