Browse Element(s) Details


OsAffx.30376.1.S1_x_at

Description gb:NM_195194.1
DB_XREF= gi:37531747
TID=OsAffx.30376.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1039011/11F-box domain containing protein
LOC_Os10g104101/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30376.1.S1_x_at--219--4911Chr10:5477276..5477300 (25 bp)
GCTTCTACCAGCTCGACGCGGAGAG
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--478--9471Chr10:5477189..5477213 (25 bp)
TCTGCTTCGAGATCATCGTCGTCAC
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--109--7211Chr10:5477172..5477196 (25 bp)
GTCGTCACCTACTTCATGCCTGGGC
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--935--411Chr10:5477076..5477100 (25 bp)
ATCATGCCCATGCTCGGCGCATTCA
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--520--4811Chr10:5477065..5477089 (25 bp)
GCTCGGCGCATTCAGCGACGACATG
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--969--1851Chr10:5477048..5477072 (25 bp)
ACGACATGCACACCAACGGGAGCGT
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--955--2572Chr10:5477034..5477058 (25 bp)
AACGGGAGCGTCTACTGGCTGATCA
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--714--9531Chr10:5477024..5477048 (25 bp)
TCTACTGGCTGATCAACGACGACGA
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--473--1231Chr10:5476946..5476970 (25 bp)
AGTTCTCCAACATCAAACTGCCGCG
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--707--4851Chr10:5476907..5476931 (25 bp)
GCTACCGCGGGAACATGTGCGTCAT
LOC_Os10g10390
OsAffx.30376.1.S1_x_at--618--7291Chr10:5476891..5476915 (25 bp)
GTGCGTCATGAGATCCGACGACGGC
LOC_Os10g10390
Target Sequence 
GCTTCTACCAGCTCGACGCGGAGAGCGCGTACCTCGGCGCCGCGCTGCGCATCGACGACGACAACGACGGCGGTGCCGGC
GGCGTCCTCTGCTTCGAGATCATCGTCGTCACCTACTTCATGCCTGGGCCGCGCCTCTGCGTCTTCTCGTCGCGCTCCGG
CGCGTGGACCGTGCACCCCTACTCCGACGCCGGCACCGCCATCATGCCCATGCTCGGCGCATTCAGCGACGACATGCACA
CCAACGGGAGCGTCTACTGGCTGATCAACGACGACGACGACGACGACGACGACAACCCATACCTCCTGGCGCTCGACGCC
CGCACCAAGCAGTTCTCCAACATCAAACTGCCGCGCGCCATGTGGACGCGCTACCGCGGGAACATGTGCGTCATGAGATC
CGACGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30376.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis