Browse Element(s) Details


OsAffx.30376.1.S1_at

Description gb:NM_195194.1
DB_XREF= gi:37531747
TID=OsAffx.30376.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1039011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30376.1.S1_at--491--4991Chr10:5477348..5477372 (25 bp)
GCATGAGCATCCCGCGCAACTTCGT
LOC_Os10g10390
OsAffx.30376.1.S1_at--118--511Chr10:5477175..5477199 (25 bp)
ATCGTCGTCACCTACTTCATGCCTG
LOC_Os10g10390
OsAffx.30376.1.S1_at--110--7211Chr10:5477172..5477196 (25 bp)
GTCGTCACCTACTTCATGCCTGGGC
LOC_Os10g10390
OsAffx.30376.1.S1_at--934--411Chr10:5477076..5477100 (25 bp)
ATCATGCCCATGCTCGGCGCATTCA
LOC_Os10g10390
OsAffx.30376.1.S1_at--286--631Chr10:5477067..5477091 (25 bp)
ATGCTCGGCGCATTCAGCGACGACA
LOC_Os10g10390
OsAffx.30376.1.S1_at--1083--3771Chr10:5477064..5477088 (25 bp)
CTCGGCGCATTCAGCGACGACATGC
LOC_Os10g10390
OsAffx.30376.1.S1_at--474--1231Chr10:5476946..5476970 (25 bp)
AGTTCTCCAACATCAAACTGCCGCG
LOC_Os10g10390
OsAffx.30376.1.S1_at--789--371Chr10:5476935..5476959 (25 bp)
ATCAAACTGCCGCGCGCCATGTGGA
LOC_Os10g10390
OsAffx.30376.1.S1_at--706--4851Chr10:5476907..5476931 (25 bp)
GCTACCGCGGGAACATGTGCGTCAT
LOC_Os10g10390
OsAffx.30376.1.S1_at--775--5491Chr10:5476897..5476921 (25 bp)
GAACATGTGCGTCATGAGATCCGAC
LOC_Os10g10390
OsAffx.30376.1.S1_at--976--9111Chr10:5476890..5476914 (25 bp)
TGCGTCATGAGATCCGACGACGGCG
LOC_Os10g10390
Target Sequence 
GCATGAGCATCCCGCGCAACTTCGTCGTCGCCAACCCCGTGTCCGGCCGCTCCGTCCTCGTGCGCGACGCCCGCTTCTAC
CAGCTCGACGCGGAGAGCGCGTACCTCGGCGCCGCGCTGCGCATCGACGACGACAACGACGGCGGTGCCGGCGGCGTCCT
CTGCTTCGAGATCATCGTCGTCACCTACTTCATGCCTGGGCCGCGCCTCTGCGTCTTCTCGTCGCGCTCCGGCGCGTGGA
CCGTGCACCCCTACTCCGACGCCGGCACCGCCATCATGCCCATGCTCGGCGCATTCAGCGACGACATGCACACCAACGGG
AGCGTCTACTGGCTGATCAACGACGACGACGACGACGACGACGACAACCCATACCTCCTGGCGCTCGACGCCCGCACCAA
GCAGTTCTCCAACATCAAACTGCCGCGCGCCATGTGGACGCGCTACCGCGGGAACATGTGCGTCATGAGATCCGACGACG
GCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis