Browse Element(s) Details


Os.25330.1.S1_at

Description gb:AK101801.1
DB_XREF= gi:32987010
TID=Os.25330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OSJNAb0022I16.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066I18, full insert sequence.
FL= gb:AK101801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1036011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25330.1.S1_at--1113--7651Chr10:5460555..5460579 (25 bp)
GGGATGCCGTGTCATGATTTCAGTT
LOC_Os10g10360
Os.25330.1.S1_at--1140--591Chr10:5460552..5460576 (25 bp)
ATGCCGTGTCATGATTTCAGTTGAC
LOC_Os10g10360
Os.25330.1.S1_at--199--10751Chr10:5460507..5460531 (25 bp)
TTGAATTTGTAAGTGACCCCATGCT
LOC_Os10g10360
Os.25330.1.S1_at--110--7071Chr10:5460499..5460523 (25 bp)
GTAAGTGACCCCATGCTTGAACTAA
LOC_Os10g10360
Os.25330.1.S1_at--465--8931Chr10:5460494..5460518 (25 bp)
TGACCCCATGCTTGAACTAACTTCA
LOC_Os10g10360
Os.25330.1.S1_at--768--8971Chr10:5460482..5460506 (25 bp)
TGAACTAACTTCATTGCCATGCCTC
LOC_Os10g10360
Os.25330.1.S1_at--1083--9191Chr10:5460468..5460492 (25 bp)
TGCCATGCCTCTCTAGTTTCAGCTA
LOC_Os10g10360
Os.25330.1.S1_at--796--591Chr10:5460464..5460488 (25 bp)
ATGCCTCTCTAGTTTCAGCTACAAG
LOC_Os10g10360
Os.25330.1.S1_at--724--9511Chr10:5460459..5460483 (25 bp)
TCTCTAGTTTCAGCTACAAGAAAGC
LOC_Os10g10360
Os.25330.1.S1_at--720--1551Chr10:5460437..5460461 (25 bp)
AGCTTATATTCTTTCCCCATTTTGG
LOC_Os10g10360
Os.25330.1.S1_at--1144--3631Chr10:5460427..5460451 (25 bp)
CTTTCCCCATTTTGGATAAATTGCA
LOC_Os10g10360
Target Sequence 
GGGATGCCGTGTCATGATTTCAGTTGACGAGGAACAAACTTCTGATACTTGAATTTGTAAGTGACCCCATGCTTGAACTA
ACTTCATTGCCATGCCTCTCTAGTTTCAGCTACAAGAAAGCTTATATTCTTTCCCCATTTTGGATAAATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis