Browse Element(s) Details


OsAffx.30374.3.S1_s_at

Description tigr:9638.m00908
TID=OsAffx.30374.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1033411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10290NANA10+5420716..5422699hypothetical protein
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30374.3.S1_s_at--355--6911Chr10:5446408..5446432 (25 bp)
GTATGCTCCCAATTCAGTTCGGCTG
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--389--8411Chr10:5446432..5446456 (25 bp)
GGCCCATCTATATCCCGTGTATGTA
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--1081--3172Chr10:5446464..5446488 (25 bp)
AATTGGAGACGCAACCGCAGGAGCC
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--489--5772Chr10:5446502..5446526 (25 bp)
GACGTTTCAGCTTCGCATCGCAGAA
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--1121--4971Chr10:5446516..5446540 (25 bp)
GCATCGCAGAAGTCCATCCGTGACT
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--494--10691Chr10:5446566..5446590 (25 bp)
TTGCCATGTGCCGACTACAGGTGCT
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--646--9871Chr10:5446581..5446605 (25 bp)
TACAGGTGCTGCATGCTGGCATCAT
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--248--4531Chr10:5446615..5446639 (25 bp)
GCCGCGGACTTGATGGAGGACAACA
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--310--371Chr10:5446639..5446663 (25 bp)
ATCAACACCGACAACATGGCTGACT
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--1086--851Chr10:5446654..5446678 (25 bp)
ATGGCTGACTGCTCTCATGTTCCTG
LOC_Os10g10334
OsAffx.30374.3.S1_s_at--981--9252Chr10:5446680..5446703 (24 bp)
TCCTCCTCCAAATCAAACCAATGTG
LOC_Os10g10334
Target Sequence 
GTATGCTCCCAATTCAGTTCGGCTGGCCCATCTATATCCCGTGTATGTACACAAACAATTGGAGACGCAACCGCAGGAGC
CGCAGCTGCTCGGCGACGTTTCAGCTTCGCATCGCAGAAGTCCATCCGTGACTCCGCCGCACTGGTGGCACCGCGGCATT
GCCATGTGCCGACTACAGGTGCTGCATGCTGGCATCATCGGCCGGCGGCCGCGGACTTGATGGAGGACAACATCAACACC
GACAACATGGCTGACTGCTCTCATGTTCCTGTTCCTCCTCCAAATCAAACCAATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30374.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis