Browse Element(s) Details


OsAffx.30374.1.S1_at

Description gb:NM_195190.1
DB_XREF= gi:37531739
TID=OsAffx.30374.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1033411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10290NANA10+5420716..5422699hypothetical protein
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30374.1.S1_at--538--5371Chr10:5443746..5443770 (25 bp)
GAAGACTGCAGGAGGCTCACAGCCG
LOC_Os10g10334
OsAffx.30374.1.S1_at--456--9051Chr10:5443752..5443776 (25 bp)
TGCAGGAGGCTCACAGCCGATGTAC
LOC_Os10g10334
OsAffx.30374.1.S1_at--262--9091Chr10:5443817..5443841 (25 bp)
TGCTCAATGGCGAGCGCCTTGTCAA
LOC_Os10g10334
OsAffx.30374.1.S1_at--459--1351Chr10:5444448..5444472 (25 bp)
AGAGCAGTGCGCTGTTGGTTCTAAA
LOC_Os10g10334
OsAffx.30374.1.S1_at--269--5031Chr10:5444451..5444475 (25 bp)
GCAGTGCGCTGTTGGTTCTAAATCT
LOC_Os10g10334
OsAffx.30374.1.S1_at--788--4571Chr10:5444456..5444480 (25 bp)
GCGCTGTTGGTTCTAAATCTGAAAT
LOC_Os10g10334
OsAffx.30374.1.S1_at--76--2271Chr10:5444470..5444494 (25 bp)
AAATCTGAAATACCCAGACCTCCCT
LOC_Os10g10334
OsAffx.30374.1.S1_at--264--3431Chr10:5444484..5444508 (25 bp)
CAGACCTCCCTGTTGATCTTGTGAA
LOC_Os10g10334
OsAffx.30374.1.S1_at--881--8611Chr10:5445019..5445043 (25 bp)
TGGGTGGAGCTCCTTCTATTCGTAG
LOC_Os10g10334
OsAffx.30374.1.S1_at--206--8551Chr10:5445023..5445047 (25 bp)
TGGAGCTCCTTCTATTCGTAGTGGG
LOC_Os10g10334
OsAffx.30374.1.S1_at--850--1591Chr10:5445026..5445050 (25 bp)
AGCTCCTTCTATTCGTAGTGGGTGG
LOC_Os10g10334
Target Sequence 
GAAGACTGCAGGAGGCTCACAGCCGATGTACGGGCGGATCATCTTCCGGAGCGAAGCGTTTGTGCAGCTGGTGCTCAATG
GCGAGCGCCTTGTCAAGGAGGAGAGCAGTGCGCTGTTGGTTCTAAATCTGAAATACCCAGACCTCCCTGTTGATCTTGTG
AAATGGCAGTATGNNNGTTNNNGGNNNANNNNNNNNTGGGTGGAGCTCCTTCTATTCGTAGTGGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis