Browse Element(s) Details


Os.54774.1.S1_at

Description gb:AK106732.1
DB_XREF= gi:32991941
TID=Os.54774.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H11, full insert sequence.
FL= gb:AK106732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g289702/11retrotransposon, putative, centromere-specific
LOC_Os03g359902/11retrotransposon, putative, centromere-specific
LOC_Os04g206402/11retrotransposon, putative, centromere-specific
LOC_Os03g320702/11retrotransposon, putative, centromere-specific
LOC_Os06g335102/11retrotransposon, putative, centromere-specific
LOC_Os11g253802/11retrotransposon, putative, centromere-specific
LOC_Os03g388402/11retrotransposon, putative, centromere-specific
LOC_Os10g092802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g057902/11retrotransposon, putative, centromere-specific
LOC_Os02g174902/11retrotransposon, putative, centromere-specific
LOC_Os11g127102/11retrotransposon, putative, centromere-specific
LOC_Os12g221702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g388302/11retrotransposon, putative, centromere-specific
LOC_Os11g127202/11retrotransposon, putative, centromere-specific
LOC_Os09g092792/11
LOC_Os05g209702/11retrotransposon, putative, centromere-specific
LOC_Os11g318602/11retrotransposon, putative, centromere-specific
LOC_Os03g373772/11retrotransposon, putative, centromere-specific
LOC_Os09g038702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g121002/11retrotransposon, putative, centromere-specific, expressed
LOC_Os07g237002/11retrotransposon, putative, centromere-specific
LOC_Os07g202602/11hypothetical protein
LOC_Os08g300502/11retrotransposon, putative, centromere-specific
LOC_Os02g196101/11retrotransposon, putative, centromere-specific
LOC_Os02g272701/11retrotransposon, putative, centromere-specific
LOC_Os04g178201/11retrotransposon, putative, centromere-specific
LOC_Os04g402601/11retrotransposon, putative, centromere-specific
LOC_Os09g064801/11retrotransposon, putative, centromere-specific
LOC_Os04g178101/11retrotransposon, putative, centromere-specific
LOC_Os03g451101/11retrotransposon, putative, centromere-specific
LOC_Os01g313001/11retrotransposon, putative, centromere-specific
LOC_Os11g220301/11retrotransposon, putative, centromere-specific
LOC_Os03g315421/11retrotransposon, putative, centromere-specific
LOC_Os05g200901/11retrotransposon protein, putative, unclassified
LOC_Os07g209401/11retrotransposon, putative, centromere-specific
LOC_Os08g215201/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed
LOC_Os11g28990NANA11+16273337..16277985RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54774.1.S1_at--752--9471Chr07:14713870..14713894 (25 bp)
TCTGCAAGAAGGTGGTGCTAATCTC
NONE
Os.54774.1.S1_at--808--131Chr07:14713834..14713858 (25 bp)
ATTAAGAAGGAAGTGATGTGACCAT
NONE
Os.54774.1.S1_at--987--47146Chr11:13968042..13968073 (25 bp)
GCTGGAATCCGATTCTGCTACACTG
LOC_Os11g25380
Os.54774.1.S1_at--101--52757Chr11:12188320..12188351 (25 bp)
GAATCCGATTCTGCTACACTGCTGA
LOC_Os11g22030
Os.54774.1.S1_at--856--411Chr07:14713614..14713638 (25 bp)
ATCATCCCCGAATTCCATCTTGTTT
NONE
Os.54774.1.S1_at--962--531Chr07:14713611..14713635 (25 bp)
ATCCCCGAATTCCATCTTGTTTTGA
NONE
Os.54774.1.S1_at--1072--4211Chr07:14713607..14713631 (25 bp)
CCGAATTCCATCTTGTTTTGACGCA
NONE
Os.54774.1.S1_at--59--10691Chr07:14713602..14713626 (25 bp)
TTCCATCTTGTTTTGACGCAATCAC
NONE
Os.54774.1.S1_at--1081--3551Chr07:14713599..14713623 (25 bp)
CATCTTGTTTTGACGCAATCACAAA
NONE
Os.54774.1.S1_at--106--3651Chr07:14713416..14713440 (25 bp)
CTTCAGGGTTGCTTAGGGTTTTGAT
NONE
Os.54774.1.S1_at--276--6651Chr07:14713409..14713433 (25 bp)
GTTGCTTAGGGTTTTGATTAATTGT
NONE
Target Sequence 
TCTGCAAGAAGGTGGTGCTAATCTCAGCGCATTAGAATTAAGAAGGAAGTGATGTGACCATGGCTACTATGGATACAACC
GTTGCTCACATATAGATGAACAACAAGATATTAAGTTCAAGTCCTCCAAGTGCTGGAATCCGATTCTGCTACACTGCTGA
CTTCAAACGGCCACCAAATCTGCATACGACCTCCGTTTTCGGCCCGTGAGTACTTGATGGAAAGCTCTCGGAGTCGTCTT
TCCAACGGATCCAGCATCATCCCCGAATTCCATCTTGTTTTGACGCAATCACAAAAACAAGGTGCTGCGTCACCTGTCAT
GGGCCTTTGGGCTTGTAACTTCGTTTGGGACCCCGGCCCAAGTGGGGCCCAGTGGGGTGCGCCCCAATCTGGTAGAGCAC
GACCCTAGGATCCTCTTGGTCGTTCTCGCACCCCTATAAGTAGCCAGATACCCCTTCAGGGTTGCTTAGGGTTTTGATTA
ATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis