Browse Element(s) Details


OsAffx.7241.1.S1_at

Description tigr:9639.m02617
TID=OsAffx.7241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Gpi16 subunit, GPI transamidase component
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2898011/11Gpi16 subunit, GPI transamidase component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed
LOC_Os11g28990NANA11+16273337..16277985RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003923molecular_functionGPI-anchor transamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7241.1.S1_at--1017--471Chr11:16267392..16267416 (25 bp)
ATCGATGAATATCCTCCTGATGCTA
LOC_Os11g28980
OsAffx.7241.1.S1_at--10--6531Chr11:16267423..16267447 (25 bp)
GATTTGACATCCCATCAGCTTTGGT
LOC_Os11g28980
OsAffx.7241.1.S1_at--410--2831Chr11:16267671..16267695 (25 bp)
AAGTATTGCTTGTTCCCTTGACAAC
LOC_Os11g28980
OsAffx.7241.1.S1_at--948--5611Chr11:16267690..16267714 (25 bp)
GACAACTCCTGATTTCAGCATGCCA
LOC_Os11g28980
OsAffx.7241.1.S1_at--461--591Chr11:16267709..16267733 (25 bp)
ATGCCATACAATGTCATCACCTTCA
LOC_Os11g28980
OsAffx.7241.1.S1_at--681--2051Chr11:16267733..16267757 (25 bp)
ACTTGCACCGTCTTAGCACTTTATT
LOC_Os11g28980
OsAffx.7241.1.S1_at--264--6591Chr11:16270104..16270128 (25 bp)
GATTCCTCTGTTGATAGCCAAGCTA
LOC_Os11g28980
OsAffx.7241.1.S1_at--644--2911Chr11:16270157..16270181 (25 bp)
AAGGATCTTCACCTACATCTCTGTT
LOC_Os11g28980
OsAffx.7241.1.S1_at--416--10831Chr11:16270211..16270235 (25 bp)
TTGTGGCGGTAGTAGCTGTCTCACT
LOC_Os11g28980
OsAffx.7241.1.S1_at--896--4731Chr11:16270225..16270249 (25 bp)
GCTGTCTCACTTCATTACTTGTCAA
LOC_Os11g28980
OsAffx.7241.1.S1_at--442--5191Chr11:16270286..16270310 (25 bp)
GCAATGTCCAAAACCACGGCTGTAG
LOC_Os11g28980
Target Sequence 
ATCGATGAATATCCTCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAG
CCGAAGTTATCCTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGAAGATGGCGTGGTCAAGTCAT
ATACAGAAGTATTGCTTGTTCCCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCACCTTCACTTGCACCGTC
TTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGC
CGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGCTAAGGGGGAAGAAGGTCGACCCACCACCACAAGGATCTTCAC
CTACATCTCTGTTGTCAACAAAGCTGCTACTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTACTTGTCA
AACAGTTGAGGATTGATGCCATTGTGTACAATTTTGAGCAATGTCCAAAACCACGGCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis