Browse Element(s) Details


OsAffx.19061.1.S1_at

Description tigr:9639.m02621
TID=OsAffx.19061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2901411/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed
LOC_Os11g28990NANA11+16273337..16277985RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified
LOC_Os11g29030OsAffx.7242.1.S1_s_at11/1111+16306262..16307525disease resistance protein RPM1 homolog, putative
LOC_Os11g29050OsAffx.31195.1.S1_s_at11/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050OsAffx.31195.1.S1_at10/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050Os.51873.1.S1_at7/1111+16319877..16324837NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19061.1.S1_at--710--7611Chr11:16293529..16293553 (25 bp)
GGGAAAATTTTCGACCTCACTCATG
LOC_Os11g29014
OsAffx.19061.1.S1_at--832--5831Chr11:16293517..16293541 (25 bp)
GACCTCACTCATGTCAGATCTGATG
LOC_Os11g29014
OsAffx.19061.1.S1_at--648--2191Chr11:16293486..16293510 (25 bp)
ACAACGTGGATGCTACTACTGCCTG
LOC_Os11g29014
OsAffx.19061.1.S1_at--256--9291Chr11:16293455..16293479 (25 bp)
TCCGATTCCCCGAACTAATGTTGTG
LOC_Os11g29014
OsAffx.19061.1.S1_at--477--2311Chr11:16293385..16293409 (25 bp)
AAAGGCATCTCAGGCCCAGGGATGA
LOC_Os11g29014
OsAffx.19061.1.S1_at--792--5851Chr11:16293308..16293332 (25 bp)
GACCACCCTTGCCAGAGAAATTTTC
LOC_Os11g29014
OsAffx.19061.1.S1_at--778--5311Chr11:16293169..16293193 (25 bp)
GAAGGTATTCGTGATAGCGCAGTAT
LOC_Os11g29014
OsAffx.19061.1.S1_at--1155--1611Chr11:16293154..16293178 (25 bp)
AGCGCAGTATTGGAGCACATCATTT
LOC_Os11g29014
OsAffx.19061.1.S1_at--984--8051Chr11:16293143..16293167 (25 bp)
GGAGCACATCATTTCCAGTGAAGTA
LOC_Os11g29014
OsAffx.19061.1.S1_at--437--211Chr11:16293044..16293068 (25 bp)
ATTTGTGGGCAACGCTCAAGCAGGC
LOC_Os11g29014
OsAffx.19061.1.S1_at--752--5071Chr11:16293021..16293045 (25 bp)
GCAGCCGAATTCTCATCACAACAAG
LOC_Os11g29014
Target Sequence 
GGGAAAATTTTCGACCTCACTCATGTCAGATCTGATGAAGATCACAACGTGGATGCTACTACTGCCTGCCATGTTCCGAT
TCCCCGAACTAATGTTGTGGGGAGGGTGCAGGAGACTAGAATGCTGGTTGATAAGCTTACAGGGAAAGGCATCTCAGGCC
CAGGGATGACTGGACAAAACGTTGAAGTCATCGCAATTGTGGGTATGGGTGGAATTGGCAAGACCACCCTTGCCAGAGAA
ATTTTCACTAACGATATGATCCAAGGGAAGTTTGACAAGAGACTGTGGATCACTATTAGTAAAGGTAATAATAGTATTAG
TCTATTGCAACAGGTTATACAAGGACTTGGGTGTGAGCATGAAGGTATTCGTGATAGCGCAGTATTGGAGCACATCATTT
CCAGTGAAGTAAGAAGAAAGAAAGTTTTCCTTGTGATGGATGATGTGTGGGAAGCTAGAGGGGTGGTGGACATTTTTAAA
AAATCATTTGTGGGCAACGCTCAAGCAGGCAGCCGAATTCTCATCACAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis