Browse Element(s) Details


OsAffx.7242.1.S1_s_at

Description tigr:9639.m02622
TID=OsAffx.7242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2903011/11disease resistance protein RPM1 homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified
LOC_Os11g29030OsAffx.7242.1.S1_s_at11/1111+16306262..16307525disease resistance protein RPM1 homolog, putative
LOC_Os11g29050OsAffx.31195.1.S1_s_at11/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050OsAffx.31195.1.S1_at10/1111+16319877..16324837NB-ARC domain containing protein, expressed
LOC_Os11g29050Os.51873.1.S1_at7/1111+16319877..16324837NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7242.1.S1_s_at--835--1571Chr11:16306641..16306665 (25 bp)
AGCTCAAGAACCGTGCTCAGCAAGT
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--740--8371Chr11:16306721..16306745 (25 bp)
GGCGAGACCCGCAATGGTGACCAGA
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--1087--7551Chr11:16306769..16306793 (25 bp)
GGGCGCCGGCTCATAACCGTAAAGG
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--745--2211Chr11:16306854..16306878 (25 bp)
ACAAGAACCGCGGTGTGCTAGCCAT
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--846--4571Chr11:16306919..16306943 (25 bp)
GCGCTGTACCGGAAGCATGGCCAAA
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--326--2451Chr11:16306941..16306965 (25 bp)
AAAATTTCGACTGCCGAGCGTGGGT
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--199--7371Chr11:16306964..16306988 (25 bp)
GTGACGATGCCCCAGAAGTTTGACG
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--115--1431Chr11:16306977..16307001 (25 bp)
AGAAGTTTGACGACCGTGCGGTCCT
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--1030--551Chr11:16307009..16307033 (25 bp)
ATCCTGAGTCAGGTCATGCTGCCTG
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--822--6531Chr11:16307089..16307113 (25 bp)
GATTGAAACCATGTCCCAGGAACAA
LOC_Os11g29030
OsAffx.7242.1.S1_s_at--22--7591Chr11:16307123..16307147 (25 bp)
GGGCTGAAGAACCACCTGCAAAATA
LOC_Os11g29030
Target Sequence 
AGCTCAAGAACCGTGCTCAGCAAGTGGGCGAGCGGCGCTTGCGATACGGCGTCGTCCTCAACCCGATTCCCCCTCAGCGC
GGCGAGACCCGCAATGGTGACCAGACCACGGGAGAGAACCAGGTGGCCGGGCGCCGGCTCATAACCGTAAAGGAGCCCAT
CGGCGTGGCGCGCGCCATCGAGAAACTCGAGGCGTGGATGAAAAGCCAAAGTCACAAGAACCGCGGTGTGCTAGCCATCC
ATGGGTTTGGTGGCGGGGGCAAGAGCACAATCGCGGCGGCGCTGTACCGGAAGCATGGCCAAAATTTCGACTGCCGAGCG
TGGGTGACGATGCCCCAGAAGTTTGACGACCGTGCGGTCCTCAGGAGCATCCTGAGTCAGGTCATGCTGCCTGCCACTGC
CAGTGGTGGTGGCGACCGCAGGCGACGAGGAGGAAGCAGACACGCAAAGATTGAAACCATGTCCCAGGAACAACTCATCA
AAGGGCTGAAGAACCACCTGCAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7242.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis