Browse Element(s) Details


OsAffx.7240.1.S1_at

Description tigr:9639.m02614
TID=OsAffx.7240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2895011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28910Os.22662.1.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.22662.2.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.52981.1.S1_at10/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28920OsAffx.31193.1.S1_at11/1111+16235241..16235519hypothetical protein
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed
LOC_Os11g28990NANA11+16273337..16277985RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7240.1.S1_at--981--8071Chr11:16250642..16250666 (25 bp)
GGAGCTTTTACTTGAGCGTTGCAAA
LOC_Os11g28950
OsAffx.7240.1.S1_at--660--4631Chr11:16250627..16250651 (25 bp)
GCGTTGCAAACTGAGGTGCCTTCCT
LOC_Os11g28950
OsAffx.7240.1.S1_at--31--6151Chr11:16250554..16250578 (25 bp)
GAGGTCCAGAACCTCAAGTCTCTTG
LOC_Os11g28950
OsAffx.7240.1.S1_at--497--5911Chr11:16250509..16250533 (25 bp)
GAGCTCAGTGTGGATGACAACCCTG
LOC_Os11g28950
OsAffx.7240.1.S1_at--188--9311Chr11:16250462..16250486 (25 bp)
TCCCAAATTGCGGAAGCTTGACATT
LOC_Os11g28950
OsAffx.7240.1.S1_at--306--3631Chr11:16250446..16250470 (25 bp)
CTTGACATTATGTTCTGCCCCAAAA
LOC_Os11g28950
OsAffx.7240.1.S1_at--978--1411Chr11:16250399..16250423 (25 bp)
AGAACTCAGAATCCTCACACTTAAG
LOC_Os11g28950
OsAffx.7240.1.S1_at--346--10171Chr11:16250371..16250395 (25 bp)
TATAGTATTGAAACACTCCCTGGTT
LOC_Os11g28950
OsAffx.7240.1.S1_at--554--1991Chr11:16250357..16250381 (25 bp)
ACTCCCTGGTTATTTGCAGCAAGTA
LOC_Os11g28950
OsAffx.7240.1.S1_at--184--5231Chr11:16250324..16250348 (25 bp)
GAATTTGTTCGTGGACTGCAGCTTT
LOC_Os11g28950
OsAffx.7240.1.S1_at--355--3391Chr11:16250306..16250330 (25 bp)
CAGCTTTGAGCTTCTTAGTTCCATA
LOC_Os11g28950
Target Sequence 
GGAGCTTTTACTTGAGCGTTGCAAACTGAGGTGCCTTCCTCCTGGCCTTGCCTTCCATGCAAGGGCTCTGAAGAAACTAT
GGATATGTGAGGTCCAGAACCTCAAGTCTCTTGATAACTTCGCTTGTGTTGTTGAGCTCAGTGTGGATGACAACCCTGAT
CTGCAGAGGATATCTAATTTTCCCAAATTGCGGAAGCTTGACATTATGTTCTGCCCCAAAATGGAAGTATTGGAGAATGT
GCCAGAACTCAGAATCCTCACACTTAAGGACTATAGTATTGAAACACTCCCTGGTTATTTGCAGCAAGTAAGCATGAGGA
ATTTGTTCGTGGACTGCAGCTTTGAGCTTCTTAGTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis