Browse Element(s) Details


OsAffx.19060.1.S1_at

Description tigr:9639.m02612
TID=OsAffx.19060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28870NANA11+16215824..16216669hypothetical protein
LOC_Os11g28880NANA11+16217226..16218396hypothetical protein
LOC_Os11g28890NANA11+16218742..16219935hypothetical protein
LOC_Os11g28900NANA11+16223493..16224101retrotransposon protein, putative, unclassified
LOC_Os11g28910Os.22662.1.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.22662.2.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.52981.1.S1_at10/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28920OsAffx.31193.1.S1_at11/1111+16235241..16235519hypothetical protein
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19060.1.S1_at--1095--351Chr11:16238191..16238538 (25 bp)
ATAAGGATGTGCTATGGGTGCCATA
LOC_Os11g28930
OsAffx.19060.1.S1_at--490--7711Chr11:16238533..16238553 (21 bp)
GGGTGCCATATTCTATTTTGCCAGT
LOC_Os11g28930
OsAffx.19060.1.S1_at--1103--4431Chr11:16238533..16238557 (25 bp)
GCCATATTCTATTTTGCCAGTAGCA
LOC_Os11g28930
OsAffx.19060.1.S1_at--850--10691Chr11:16238546..16238570 (25 bp)
TTGCCAGTAGCAGTATTATACGTCG
LOC_Os11g28930
OsAffx.19060.1.S1_at--981--1511Chr11:16238554..16238578 (25 bp)
AGCAGTATTATACGTCGGTCTACAT
LOC_Os11g28930
OsAffx.19060.1.S1_at--364--1871Chr11:16238565..16238589 (25 bp)
ACGTCGGTCTACATGTACGAGGAAA
LOC_Os11g28930
OsAffx.19060.1.S1_at--703--7511Chr11:16238904..16238924 (21 bp)
GTGGAGGATCGTATATGCTAATGCT
LOC_Os11g28930
OsAffx.19060.1.S1_at--1066--251Chr11:16238912..16238936 (25 bp)
ATATGCTAATGCTTGTTGCTTCAGA
LOC_Os11g28930
OsAffx.19060.1.S1_at--1016--4831Chr11:16238916..16238940 (25 bp)
GCTAATGCTTGTTGCTTCAGAAAAA
LOC_Os11g28930
OsAffx.19060.1.S1_at--866--7451Chr11:16238942..16239094 (25 bp)
GTGTGACCAAGACGAAAGATTCGTT
LOC_Os11g28930
OsAffx.19060.1.S1_at--460--3231Chr11:16238949..16239101 (25 bp)
CAAGACGAAAGATTCGTTCCTACGG
LOC_Os11g28930
Target Sequence 
ATAAGGATGTGCTATGGGTGCCATATTCTATTTTGCCAGTAGCAGTATTATACGTCGGTCTACATGTACGAGGAAAATGG
AGAAATGGTGGAGGATCGTATATGCTAATGCTTGTTGCTTCAGAAAAAGGTGTGACCAAGACGAAAGATTCGTTCCTACG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis