Browse Element(s) Details


Os.12400.1.S1_x_at

Description gb:AK109633.1
DB_XREF= gi:32994842
TID=Os.12400.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D06, full insert sequence.
FL= gb:AK109633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g419569/11Galactosyltransferase family, putative, expressed
LOC_Os08g300201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12400.1.S1_x_at--167--6751Chr12:25983478..25983502 (25 bp)
GTTCACGGGCGACGTGGACTCCATC
LOC_Os12g41956
Os.12400.1.S1_x_at--656--9211Chr08:18319990..18320014 (25 bp)
TCCACAGTTTCCATCGAACGCCAGG
LOC_Os08g30020
Os.12400.1.S1_x_at--622--8371Chr12:25983521..25983545 (25 bp)
GGCGAGACCAAGTGCCCCGCGTCGA
LOC_Os12g41956
Os.12400.1.S1_x_at--218--1131Chr12:25983531..25983555 (25 bp)
AGTGCCCCGCGTCGATCAACATCGG
LOC_Os12g41956
Os.12400.1.S1_x_at--651--5971Chr12:25983569..25983593 (25 bp)
GAGACGGTGGCGTTCCTCCCCTGCG
LOC_Os12g41956
Os.12400.1.S1_x_at--24--3371Chr12:25983803..25983827 (25 bp)
CACCGCCCCGTGCTGGAGATGAACA
LOC_Os12g41956
Os.12400.1.S1_x_at--195--1311Chr12:25983819..25983843 (25 bp)
AGATGAACACCTGCTTCCGCATGCA
LOC_Os12g41956
Os.12400.1.S1_x_at--343--2311Chr12:25983850..25983874 (25 bp)
AAAGGCGCACCGCTGCGATGGCAAC
LOC_Os12g41956
Os.12400.1.S1_x_at--906--831Chr12:25983867..25983891 (25 bp)
ATGGCAACCCCTCCAAGGATGACGA
LOC_Os12g41956
Os.12400.1.S1_x_at--701--6311NONE
GATGACGACCAGGTGGATGGATTAA
NONE
Os.12400.1.S1_x_at--813--2951Chr12:25984291..25984485 (25 bp)
AATGGAATCGGAGAGACAGTGTTGA
LOC_Os12g41956
Target Sequence 
GTTCACGGGCGACGTGGACTCCATCCTCTTCCTCCTCGCATTCCTTGCCAACCTCGCCGCCCCGGCCTCCGACGATCGCC
GGCCGCCGCCTCCACAGTTTCCATCGAACGCCAGGGGGGGGCGAGACCAAGTGCCCCGCGTCGATCAACATCGGCGGCGG
CGACGGCGAGACGGTGGCGTTCCTCCCCTGCGGGCTCGCCGTGGGTTCCGCGGTGACGGTGGTGGGGACGGCGCGGGCGG
CGCGGGCGGAGTACGTGGAGGCGCTGGAGCGGCGCGGGGAAGGGAACGGGACGGTGATGGTGGCGCAGTTCGCCGTCGAG
CTCCGCGGCCTCCGCGCCGTCGAGGGGGAGGAGCCGCCCAGGATCCTCCACCTCAACCCGCGGCTGCGCGGCGACTGGAG
CCACCGCCCCGTGCTGGAGATGAACACCTGCTTCCGCATGCAGTGGGGAAAGGCGCACCGCTGCGATGGCAACCCCTCCA
AGGATGACGACCAGGTGGATGGATTAATTAAATGTGAGAAATGGAATCGGAGAGACAGTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12400.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis