Browse Element(s) Details


Os.47922.1.S2_x_at

Description gb:AK101273.1
DB_XREF= gi:32986482
TID=Os.47922.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033A11, full insert sequence.
FL= gb:AK101273.1 gb:AK058205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4193011/11SRP40, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47922.1.S2_x_at--1089--1571Chr12:25957806..25957830 (25 bp)
AGCTCAGCAATGGTTCTTCAGAGGA
LOC_Os12g41930
Os.47922.1.S2_x_at--443--2271Chr12:25957862..25958356 (25 bp)
AAATCATCTGAACCCAAAACTGTGA
LOC_Os12g41930
Os.47922.1.S2_x_at--228--5711Chr12:25959021..25959045 (25 bp)
GACTCTGGGTATGGTGCAAAGGCAC
LOC_Os12g41930
Os.47922.1.S2_x_at--465--8251Chr12:25959248..25959272 (25 bp)
GGCAGATCGATTTACAAACCCACTC
LOC_Os12g41930
Os.47922.1.S2_x_at--42--6391Chr12:25959302..25959326 (25 bp)
GATCGCTTCAATTTTGCGAGTCGCT
LOC_Os12g41930
Os.47922.1.S2_x_at--310--1151Chr12:25959320..25959344 (25 bp)
AGTCGCTCACAGTTTACCATTCTTG
LOC_Os12g41930
Os.47922.1.S2_x_at--753--1731Chr12:25959335..25959359 (25 bp)
ACCATTCTTGCCATCGTTTACATGA
LOC_Os12g41930
Os.47922.1.S2_x_at--64--5271Chr12:25959391..25959415 (25 bp)
GAATGCTGCGTGTGTGGCGAATTCA
LOC_Os12g41930
Os.47922.1.S2_x_at--216--4311Chr12:25959444..25959468 (25 bp)
CCATTTTGTTAGTGCTGGGTGCCCT
LOC_Os12g41930
Os.47922.1.S2_x_at--453--7711Chr12:25959460..25959484 (25 bp)
GGGTGCCCTGCTAAATCATCAAAAT
LOC_Os12g41930
Os.47922.1.S2_x_at--632--6031Chr12:25959503..25959527 (25 bp)
GAGATGTATCATTTTGCCACTGCTA
LOC_Os12g41930
Target Sequence 
AGCTCAGCAATGGTTCTTCAGAGGATGATGGTGCCAAACCGAATAAAAGGCAGAAAAAATCATCTGAACCCAAAACTGTG
AATGCATTTCAACGGGTGAAACTAGAGGATGTTAAATTTGCTGATGATAGGCTTCAGGATAACTCATATTGGGCTAAGGG
TGGTGCAGACTCTGGGTATGGTGCAAAGGCACAAGAGGTTCTTGGGCAAGTTAGAGGAAGGGGCTTTAGACATGAGAAGA
CCAAGAAGAAGCGTGGAACCTACAGGGGTGGGCAGATCGATTTACAAACCCACTCAATCAAGTTCAACGATTCAGATGAC
GAGTGATCGCTTCAATTTTGCGAGTCGCTCACAGTTTACCATTCTTGCCATCGTTTACATGATGATCAGCCTTCAGAAAG
AATGAACTGGAGGGAATGCTGCGTGTGTGGCGAATTCAGGAGGAACATGAAATTGCTTTATTATGCCCATTTTGTTAGTG
CTGGGTGCCCTGCTAAATCATCAAAATTTTGTATTGATACTCACTGAGATGTATCATTTTGCCACTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47922.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis