Browse Element(s) Details


Os.8820.1.S2_a_at

Description gb:AK068250.1
DB_XREF= gi:32978268
TID=Os.8820.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013139B12, full insert sequence.
FL= gb:AK068250.1 gb:AK100275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g419009/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41870Os.14919.1.S1_at7/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870Os.56216.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870OsAffx.29313.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41880Os.5602.1.S1_at10/1112+25919868..25923725CCAAT-box transcription factor complex WHAP5, putative, expressed
LOC_Os12g41890NANA12+25927204..25930524Amino acid permease family protein
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8820.1.S2_a_at--274--251Chr12:25936194..25936218 (25 bp)
ATATGCTGGCGAGGAACTGACTTAT
LOC_Os12g41900
Os.8820.1.S2_a_at--1140--8371Chr12:25936187..25936211 (25 bp)
GGCGAGGAACTGACTTATAATTATA
LOC_Os12g41900
Os.8820.1.S2_a_at--467--351Chr12:25936171..25936195 (25 bp)
ATAATTATAAATTTCCACTGGAGGA
LOC_Os12g41900
Os.8820.1.S2_a_at--940--2811Chr12:25936142..25936166 (25 bp)
AAGATTCCATGCCATTGTGGTTCCC
LOC_Os12g41900
Os.8820.1.S2_a_at--544--591Chr12:25936136..25936158 (23 bp)
ATGCCATTGTGGTTCCCAGAGGTGC
LOC_Os12g41900
Os.8820.1.S2_a_at--489--7891NONE
GGTTCCCAGAGGTGCCGCGGATCAA
NONE
Os.8820.1.S2_a_at--714--1331Chr12:25935636..25935658 (23 bp)
AGAGGTGCCGCGGATCAATGAATTA
LOC_Os12g41900
Os.8820.1.S2_a_at--654--7291Chr12:25935632..25935656 (25 bp)
GTGCCGCGGATCAATGAATTAGGAA
LOC_Os12g41900
Os.8820.1.S2_a_at--162--6811NONE
GTTTATAAGTCAGGAGGTAACTGCA
NONE
Os.8820.1.S2_a_at--927--7831Chr12:25935306..25935330 (25 bp)
GGTAACTGCAATTGGGTGCTACCCC
LOC_Os12g41900
Os.8820.1.S2_a_at--997--3171Chr12:25935298..25935322 (25 bp)
CAATTGGGTGCTACCCCAGTATGTA
LOC_Os12g41900
Target Sequence 
ATATGCTGGCGAGGAACTGACTTATAATTATAAATTTCCACTGGAGGAAAAAAAGATTCCATGCCATTGTGGTTCCCAGA
GGTGCCGCGGATCAATGAATTAGGAAGTAAAGTTTATAAGTCAGGAGGTAACTGCAATTGGGTGCTACCCCAGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8820.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis