Browse Element(s) Details


Os.8820.1.S1_a_at

Description gb:AK100275.1
DB_XREF= gi:32985484
TID=Os.8820.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073B16, full insert sequence.
FL= gb:AK068250.1 gb:AK100275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4190011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41870Os.14919.1.S1_at7/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870Os.56216.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870OsAffx.29313.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41880Os.5602.1.S1_at10/1112+25919868..25923725CCAAT-box transcription factor complex WHAP5, putative, expressed
LOC_Os12g41890NANA12+25927204..25930524Amino acid permease family protein
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8820.1.S1_a_at--746--2331Chr12:25938126..25938150 (25 bp)
AAAGAGTGGGCATCTCTCTTCTCAG
LOC_Os12g41900
Os.8820.1.S1_a_at--560--7311Chr12:25938101..25938125 (25 bp)
GTGCTCTCAGCAATTGTTTTGACTC
LOC_Os12g41900
Os.8820.1.S1_a_at--79--2971Chr12:25937953..25937977 (25 bp)
AATGGATGAGCAGCTCTCCAGACCT
LOC_Os12g41900
Os.8820.1.S1_a_at--263--3431Chr12:25937935..25937959 (25 bp)
CAGACCTCTTCGTGATCTTGTTGAA
LOC_Os12g41900
Os.8820.1.S1_a_at--57--5971Chr12:25937841..25937865 (25 bp)
GAGAAGCCCTCCAAAAAGCGTGCCA
LOC_Os12g41900
Os.8820.1.S1_a_at--540--2671Chr12:25937826..25937850 (25 bp)
AAGCGTGCCAAACCTTCACATAATG
LOC_Os12g41900
Os.8820.1.S1_a_at--1018--2771Chr12:25937664..25937684 (21 bp)
AAGAGAAACAGGTCTTCCCATCCTA
LOC_Os12g41900
Os.8820.1.S1_a_at--300--4351Chr12:25937639..25937663 (25 bp)
CCAGTAAGCCTCTTGTTAGTAGCAA
LOC_Os12g41900
Os.8820.1.S1_a_at--764--5471Chr12:25937597..25937621 (25 bp)
GAACTACATCAGCAATGCCTGCAAA
LOC_Os12g41900
Os.8820.1.S1_a_at--455--10871Chr12:25937553..25937577 (25 bp)
TTGGCCACTGAGTCCAACCTGAAGA
LOC_Os12g41900
Os.8820.1.S1_a_at--897--3311Chr12:25937501..25937525 (25 bp)
CACATGGTTGTGAAGCGCCTACTGA
LOC_Os12g41900
Target Sequence 
AAAGAGTGGGCATCTCTCTTCTCAGGTGCTCTCAGCAATTGTTTTGACTCATGGTATGCCAGGAAAAATATTGTGGCTAA
AACCATGGATGATACATTGAGACCCAAAGAATATACTTACTACAGGAAGAGGAAACTGAGGAAAAACTGTGAAGCATCAT
CATCAGAAAAACCAATGGATGAGCAGCTCTCCAGACCTCTTCGTGATCTTGTTGAATGCAAGGTTAATATGAAAAATATC
CATCGATCAAGCAAGGCTGGGATTTCGCAGAGAGTTTCTGTTGTGGAGAAGCCCTCCAAAAAGCGTGCCAAACCTTCACA
TAATGATAATATTAATCTGAATATCCAGCAGGACTTGAAACTCCTTTCCGANAAGGTGCNAAAGAGAAACAGGTCTTCCC
ATCCTACCAGTAAGCCTCTTGTTAGTAGCAAAGTGCCTACTGAGGATAGAACTACATCAGCAATGCCTGCAAAGAAAAGA
AAGCAGAAAAACTTGGCCACTGAGTCCAACCTGAAGACAAAAGCAGTAATTTTATCTCCAGAATCACATGGTTGTGAAGC
GCCTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8820.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis