Browse Element(s) Details


Os.5602.1.S1_at

Description gb:AK065163.1
DB_XREF= gi:32975181
TID=Os.5602.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C07, full insert sequence.
FL= gb:AK065163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4188010/11CCAAT-box transcription factor complex WHAP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41870Os.14919.1.S1_at7/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870Os.56216.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41870OsAffx.29313.1.S1_at1/1112+25910913..25916892transposon protein, putative, Mutator sub-class
LOC_Os12g41880Os.5602.1.S1_at10/1112+25919868..25923725CCAAT-box transcription factor complex WHAP5, putative, expressed
LOC_Os12g41890NANA12+25927204..25930524Amino acid permease family protein
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5602.1.S1_at--951--7551NONE
GGGCCGTAAGCCATATCTCCATGAG
NONE
Os.5602.1.S1_at--985--9491Chr12:25920420..25920444 (25 bp)
TCTCCATGAGTCACGGCATCAACAT
LOC_Os12g41880
Os.5602.1.S1_at--552--5891Chr12:25920376..25920400 (25 bp)
GAGCTGGAGGCCGATTTCTTAATTC
LOC_Os12g41880
Os.5602.1.S1_at--1097--2771Chr12:25920334..25920358 (25 bp)
AAGAGCATTCTGATTCCAGTTCCAG
LOC_Os12g41880
Os.5602.1.S1_at--719--2491Chr12:25920304..25920328 (25 bp)
AACAGGATGGAGTTGCACCCCGTGA
LOC_Os12g41880
Os.5602.1.S1_at--487--7711Chr12:25920246..25920270 (25 bp)
GGGTGCATCATCAGCTAAACAAAAT
LOC_Os12g41880
Os.5602.1.S1_at--692--2131Chr12:25920071..25920095 (25 bp)
ACAGATTTTGCAGCCTTTGGTTCGG
LOC_Os12g41880
Os.5602.1.S1_at--1134--9071Chr12:25920044..25920068 (25 bp)
TGCTCAGTTTCTTTACCTTCTTGTA
LOC_Os12g41880
Os.5602.1.S1_at--395--1211Chr12:25920011..25920035 (25 bp)
AGTTTTCGTCAGTTGTGCTTTGTCA
LOC_Os12g41880
Os.5602.1.S1_at--211--1351Chr12:25919945..25919969 (25 bp)
AGAGTTCATTAGCTTGCCAATTGTT
LOC_Os12g41880
Os.5602.1.S1_at--514--6611Chr12:25919913..25919937 (25 bp)
GATTGGATTGGTCTCTTACTGCCTT
LOC_Os12g41880
Target Sequence 
GGGCCGTAAGCCATATCTCCATGAGTCACGGCATCAACATGCCCTGAAAAGGGCTAGGGGAGCTGGAGGCCGATTTCTTA
ATTCAAAATCGGATGACAAGGAAGAGCATTCTGATTCCAGTTCCAGAGATAAACAGGATGGAGTTGCACCCCGTGATAGT
GGCCAACCGTCTACCTCTCCGTCTTCAAAGGGTGCATCATCAGCTAAACAAAATAAGAAGTCAAAAACCAGTAACTAAAC
GGGATTTAANCACCTGGTGTGAAACATGGAAACAGTTTTGTACAGTACATGCTAGNGATCGACAAAGAATGGTGTCATTG
GGTGTTGTAGGATAATGCTCCATAGAGAATATATAGACAGGGCAACAGATTTTGCAGCCTTTGGTTCGGTCTGCTCAGTT
TCTTTACCTTCTTGTACAATGAGTAGTTTTCGTCAGTTGTGCTTTGTCATGGGGATAGCTGAATTTCTTCAGGAAGTCTT
GTAGTTTTAAAGAGTTCATTAGCTTGCCAATTGTTTGCTTTGGATTGGATTGGTCTCTTACTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis