Browse Element(s) Details


OsAffx.21485.1.S1_at

Description gb:NM_192164.1
DB_XREF= gi:34911411
GEN=P0034C09.38
TID=OsAffx.21485.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) EnSpm-like transposon-like protein (P0034C09.38), mRNA.
PROD=EnSpm-like transposon-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4987010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g419905/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21485.1.S1_at--31--10571Chr01:28974446..28974470 (25 bp)
TTGCGTTGTCTCCTTAGGTTAGCAC
LOC_Os01g49870
OsAffx.21485.1.S1_at--214--4391Chr01:28974485..28974509 (25 bp)
CCAAGGGACCCTGAATTTTCTGAGT
LOC_Os01g49870
OsAffx.21485.1.S1_at--552--10171Chr01:28974500..28974524 (25 bp)
TTTTCTGAGTTGCACCCTAACTTAG
LOC_Os01g49870
OsAffx.21485.1.S1_at--706--6511Chr01:28974533..28974557 (25 bp)
GATTTTTGGCCATACTTCAACGACT
LOC_Os01g49870
OsAffx.21485.1.S1_at--811--2111Chr01:28974580..28974604 (25 bp)
ACATGTGAAGCTTGTGGTGCCAAAG
LOC_Os01g49870
OsAffx.21485.1.S1_at--541--10452Chr01:28974684..28974708 (25 bp)
TTACCTTTGTGCTATCGGGATGGCC
LOC_Os01g49870
OsAffx.21485.1.S1_at--222--8012Chr01:28974701..28974725 (25 bp)
GGATGGCCTGGTTCAGCACATGATA
LOC_Os01g49870
OsAffx.21485.1.S1_at--140--6332Chr01:28974740..28974764 (25 bp)
GATGCAACGACAACTCATGCTCACA
LOC_Os01g49870
OsAffx.21485.1.S1_at--412--2251NONE
AAATTTCCACATCCACCACAAGGGA
NONE
OsAffx.21485.1.S1_at--181--8312Chr01:28974910..28974934 (25 bp)
GGCTACCTTTCACCGTATAGATGCA
LOC_Os01g49870
OsAffx.21485.1.S1_at--512--653Chr01:28975193..28975217 (25 bp)
ATGCAGATTATTTTCCAATGCCTAC
LOC_Os01g49870
Target Sequence 
TTGCGTTGTCTCCTTAGGTTAGCACCTAACATAATTAGACCAAGGGACCCTGAATTTTCTGAGTTGCACCCTAACTTAGA
AAACCCAGATTTTTGGCCATACTTCAACGACTGTATAGGAGCAATAGATGGGACACATGTGAAGCTTGTGGTGCCAAAGA
CGAAGAGAATACAATACTTGAATAGGTACAATGAAACCTCACAGAATGTATTGGCTGTTTGTGATTTTGACATGAGGTTT
ACCTTTGTGCTATCGGGATGGCCTGGTTCAGCACATGATATGAGAGTGTTCAAAGATGCAACGACAACTCATGCTCACAA
ATTTCCACATCCACCACAAGGGAAGTACTATGTGGTTGATGCGGGGTACCCAAACCGCCCGGGCTACCTTTCACCGTATA
GATGCACTAGGTATCATGTGGAGCAATGGAAAAACGGGCCCCCGCCACAAGTCGAGAGAGCAAAATTAGGGATAGGGAAT
TTGCTAGGTGTGATGCGGATGCAGATTATTTTCCAATGCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis