Browse Element(s) Details


Os.33607.2.S1_at

Description gb:NM_192167.1
DB_XREF= gi:34911417
GEN=P0431H09.7
TID=Os.33607.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33607 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CRS2 (P0431H09.7), mRNA.
PROD=putative CRS2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4990010/11peptidyl-tRNA hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33607.2.S1_at--799--6971Chr01:28987049..28987070 (22 bp)
GTACCAAGGGACTCGCCACAACAGC
LOC_Os01g49900
Os.33607.2.S1_at--1091--2871Chr01:28986919..28987065 (25 bp)
AAGGGACTCGCCACAACAGCTCAAA
LOC_Os01g49900
Os.33607.2.S1_at--1115--2191Chr01:28986907..28987053 (25 bp)
ACAACAGCTCAAACCCATTCTGCAA
LOC_Os01g49900
Os.33607.2.S1_at--116--2151NONE
ACAGCTCAAACCCATTCTGCAAGTA
NONE
Os.33607.2.S1_at--952--1571Chr01:28986902..28986926 (25 bp)
AGCTCAAACCCATTCTGCAAGTATG
LOC_Os01g49900
Os.33607.2.S1_at--805--9691Chr01:28986899..28986923 (25 bp)
TCAAACCCATTCTGCAAGTATGGAA
LOC_Os01g49900
Os.33607.2.S1_at--584--2611Chr01:28986896..28986920 (25 bp)
AACCCATTCTGCAAGTATGGAAATG
LOC_Os01g49900
Os.33607.2.S1_at--916--3591Chr01:28986892..28986916 (25 bp)
CATTCTGCAAGTATGGAAATGGCCA
LOC_Os01g49900
Os.33607.2.S1_at--781--8131Chr01:28986878..28986902 (25 bp)
GGAAATGGCCACATGTTAGATGAAG
LOC_Os01g49900
Os.33607.2.S1_at--903--2951Chr01:28986877..28986899 (23 bp)
AATGGCCACATGTTAGATGAAGTTG
LOC_Os01g49900
Os.33607.2.S1_at--540--2111Chr01:28986552..28986892 (25 bp)
ACATGTTAGATGAAGTTGGATTCGA
LOC_Os01g49900
Target Sequence 
GTACCAAGGGACTCGCCACAACAGCTCAAACCCATTCTGCAAGTATGGAAATGGCCACATGTTAGATGAAGTTGGATTCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33607.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis