Browse Element(s) Details


Os.41646.1.S1_at

Description gb:C97754
DB_XREF= gi:3760500
DB_XREF=C97754
CLONE=C62608_1A
TID=Os.41646.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.10 (P0431H09.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g499308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41646.1.S1_at--898--10851Chr01:29003127..29003434 (25 bp)
TTGGTCAAGATCATGAATTTGCAGT
LOC_Os01g49930
Os.41646.1.S1_at--606--7831Chr01:29003125..29003432 (25 bp)
GGTCAAGATCATGAATTTGCAGTTT
LOC_Os01g49930
Os.41646.1.S1_at--868--5031Chr01:29002962..29002985 (24 bp)
GCAGTTGTTCACCTGTCTTTGAAGA
LOC_Os01g49930
Os.41646.1.S1_at--2--3451NONE
CAGTTGTTCACCTGTCTTTGAAGAC
NONE
Os.41646.1.S1_at--199--1251NONE
AGTTGTTCACCTGTCTTTGAAGACA
NONE
Os.41646.1.S1_at--52--6651Chr01:29002962..29002982 (21 bp)
GTTGTTCACCTGTCTTTGAAGACAA
LOC_Os01g49930
Os.41646.1.S1_at--303--10691Chr01:29002715..29002981 (25 bp)
TTGTTCACCTGTCTTTGAAGACAAC
LOC_Os01g49930
Os.41646.1.S1_at--530--6751Chr01:29002713..29002979 (25 bp)
GTTCACCTGTCTTTGAAGACAACTG
LOC_Os01g49930
Os.41646.1.S1_at--784--9671Chr01:29002711..29002977 (25 bp)
TCACCTGTCTTTGAAGACAACTGCA
LOC_Os01g49930
Os.41646.1.S1_at--446--1771NONE
ACCTGTCTTTGAAGACAACTGCAGT
NONE
Os.41646.1.S1_at--763--8691Chr01:29002706..29002972 (25 bp)
TGTCTTTGAAGACAACTGCAGTTCT
LOC_Os01g49930
Target Sequence 
TTGGTCAAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTGAAGAATGCAGTTGT
TCACCTGTCTTTGAAGACAACTGCAGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis